> Thank you Jeremy, > you answered partially. I would like insert a command, to launch my script, > in the script or in the xml files of my tools to force it to change the > extension of output files. > But it seems impossible because my command perl after the command of tool's > script doesn't work in xml file.
The key thing to know is that Galaxy creates a single command line when running a tool, not a script. So, to add your command to a tool, you could try adding a semi-colon as a separator and then your command. E.g. ...; python my_prog.py [inputs] Best, J. ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/