In case anyone else runs into this and needs a quick fix... I threw in some logging.
looks like repo_info_tuple has 4 values but the admin repo code is expecting only three. repo_info_tuple: ['Generate simulated reads from a fasta sequence using dwgsim', 'http://toolshed.g2.bx.psu.edu/repos/nilshomer/dwgsim', '512671604bab', '1'] I've started walking this back... but I don't understand what where the **kwd passed in to install_respository value is coming from yet and can't spend more time on it now. Could it be that the toolshed recently began sending back 4 values? Or is it more likely to be some error on my end (i did just upgrade to the most recent galaxy-dist)? As a quickie workaround i threw in a 4th junk variable to catch that '1' at around line 290 and the tool I was after installs and seems to run ok. diff -r a7196bfe3e5c lib/galaxy/web/controllers/admin_toolshed.py --- a/lib/galaxy/web/controllers/admin_toolshed.py Thu Jun 28 12:18:44 2012 -0400 +++ b/lib/galaxy/web/controllers/admin_toolshed.py Thu Jun 28 14:46:38 2012 -0400 @@ -288,7 +288,8 @@ current_working_dir = os.getcwd() installed_repository_names = [] for name, repo_info_tuple in repo_info_dict.items(): - description, repository_clone_url, changeset_revision = repo_info_tuple + log.debug( "repo_info_tuple: %s" % repo_info_tuple ) + description, repository_clone_url, changeset_revision, junk = repo_info_tuple clone_dir = os.path.join( tool_path, self.__generate_tool_path( repository_clone_url, changeset_revision ) ) relative_install_dir = os.path.join( clone_dir, name ) if os.path.exists( clone_dir ): brad On Jun 28, 2012, at 2:16 PM, Langhorst, Brad wrote: > I found the problem with my blocked cookies, now I encounter a new error. > > File > '/mnt/ngswork/galaxy/galaxy-dist/lib/galaxy/web/controllers/admin_toolshed.py', > line 291 in install_repository > description, repository_clone_url, changeset_revision = repo_info_tuple > ValueError: too many values to unpack > > repo_info_tuple returns more than 3 items? > > Is this a known bug? Did I make some error? > > here's the full log output > > 172.17.130.187 - - [28/Jun/2012:14:09:58 -0400] "POST > /admin_toolshed/install_repository?tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&repo_info_dict=74 > 41a94a254875fe3e3519ca4cd7ade4305e8b8f%3A7b2264776773696d223a205b2247656e65726174652073696d756c617465642072656164732066726f6d20612066617374612073657175656e6365 > 207573696e672064776773696d222c2022687474703a2f2f746f6f6c736865642e67322e62782e7073752e6564752f7265706f732f6e696c73686f6d65722f64776773696d222c20223531323637313 > 63034626162222c202231225d7d&includes_tools=True HTTP/1.1" 500 - > "http://galaxy.neb.com/admin_toolshed/install_repository?tool_shed_url=http://toolshed.g2.bx.ps > u.edu/&repo_info_dict=7441a94a254875fe3e3519ca4cd7ade4305e8b8f:7b2264776773696d223a205b2247656e65726174652073696d756c617465642072656164732066726f6d206120666173 > 74612073657175656e6365207573696e672064776773696d222c2022687474703a2f2f746f6f6c736865642e67322e62782e7073752e6564752f7265706f732f6e696c73686f6d65722f64776773696 > d222c2022353132363731363034626162222c202231225d7d&includes_tools=True" > "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_6_8) AppleWebKit/537.1 (KHTML, > like Gecko) Ch > rome/22.0.1189.0 Safari/537.1" > Error - <type 'exceptions.ValueError'>: too many values to unpack > URL: > http://galaxy.neb.com/admin_toolshed/install_repository?tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&repo_info_dict=7441a94a254875fe3e3519ca4cd7ad > e4305e8b8f%3A7b2264776773696d223a205b2247656e65726174652073696d756c617465642072656164732066726f6d20612066617374612073657175656e6365207573696e672064776773696d22 > 2c2022687474703a2f2f746f6f6c736865642e67322e62782e7073752e6564752f7265706f732f6e696c73686f6d65722f64776773696d222c2022353132363731363034626162222c202231225d7d& > includes_tools=True > File > '/mnt/ngswork/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/exceptions/errormiddleware.py', > line 143 in __call__ > app_iter = self.application(environ, start_response) > File > '/mnt/ngswork/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', > line 80 in __call__ > return self.application(environ, start_response) > File > '/mnt/ngswork/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/remoteuser.py', > line 111 in __call__ > return self.app( environ, start_response ) > File > '/mnt/ngswork/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py', > line 632 in __call__ > return self.application(environ, start_response) > File '/mnt/ngswork/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line > 160 in __call__ > body = method( trans, **kwargs ) > File '/mnt/ngswork/galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py', > line 173 in decorator > return func( self, trans, *args, **kwargs ) > File > '/mnt/ngswork/galaxy/galaxy-dist/lib/galaxy/web/controllers/admin_toolshed.py', > line 291 in install_repository > description, repository_clone_url, changeset_revision = repo_info_tuple > ValueError: too many values to unpack > > Brad > -- > Brad Langhorst > [email protected] > 978-380-7564 > > > > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ -- Brad Langhorst [email protected] 978-380-7564 ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
