Dear Galaxy-Dev-Team,
I just restarted our local Galaxy instance at the University of
Tuebingen, Germany, and obtained a DRMAA.NoActiveSessionError. You can
find an excerpt from my shell below. The error can be avoided by
disabling the SGE support in the universe.wsgi.ini. However, as our
galaxy instance runs on a virtual machine, which requires the cluster
environment for proper job processing, I would very much appreciate your
help on this issue.
Kind regards,
Johannes
Traceback (most recent call last):
File "/rahome/webservices/galaxy/lib/galaxy/web/buildapp.py", line
82, in app_factory
app = UniverseApplication( global_conf = global_conf, **kwargs )
File "/rahome/webservices/galaxy/lib/galaxy/app.py", line 124, in
__init__
self.job_manager = jobs.JobManager( self )
File "/rahome/webservices/galaxy/lib/galaxy/jobs/__init__.py", line
44, in __init__
self.dispatcher = DefaultJobDispatcher( app )
File "/rahome/webservices/galaxy/lib/galaxy/jobs/__init__.py", line
1190, in __init__
self._load_plugin( name )
File "/rahome/webservices/galaxy/lib/galaxy/jobs/__init__.py", line
1207, in _load_plugin
self.job_runners[name] = runner( self.app )
File "/rahome/webservices/galaxy/lib/galaxy/jobs/runners/sge.py",
line 96, in __init__
self.ds.init( self.default_cell )
File "build/bdist.linux-x86_64/egg/DRMAA.py", line 186, in init
errParse(eno, estr)
File "build/bdist.linux-x86_64/egg/DRMAA.py", line 167, in errParse
else: raise _errindex[errno-_errMin](errstring)
InternalError: cl_com_setup_commlib failed: timeout while waiting for
thread start
Exception DRMAA.NoActiveSessionError: NoActiveSessionError('',) in
<bound method Session.__del__ of <DRMAA.Session object at 0x4ecfb50>>
ignored
--
Dipl.-Inf. (Bioinf.) Johannes Eichner
Univ. Tuebingen, WSI-RA, Sand 1, D-72076 Tuebingen, Germany
Phone: (+49/0) 7071 / 29 78970 Fax: (+49/0) 7071 / 29 5091
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
