Dear Galaxy-Dev-Team,

I just restarted our local Galaxy instance at the University of Tuebingen, Germany, and obtained a DRMAA.NoActiveSessionError. You can find an excerpt from my shell below. The error can be avoided by disabling the SGE support in the universe.wsgi.ini. However, as our galaxy instance runs on a virtual machine, which requires the cluster environment for proper job processing, I would very much appreciate your help on this issue.


Kind regards,
Johannes

Traceback (most recent call last):
File "/rahome/webservices/galaxy/lib/galaxy/web/buildapp.py", line 82, in app_factory
    app = UniverseApplication( global_conf = global_conf, **kwargs )
File "/rahome/webservices/galaxy/lib/galaxy/app.py", line 124, in __init__
    self.job_manager = jobs.JobManager( self )
File "/rahome/webservices/galaxy/lib/galaxy/jobs/__init__.py", line 44, in __init__
    self.dispatcher = DefaultJobDispatcher( app )
File "/rahome/webservices/galaxy/lib/galaxy/jobs/__init__.py", line 1190, in __init__
    self._load_plugin( name )
File "/rahome/webservices/galaxy/lib/galaxy/jobs/__init__.py", line 1207, in _load_plugin
    self.job_runners[name] = runner( self.app )
File "/rahome/webservices/galaxy/lib/galaxy/jobs/runners/sge.py", line 96, in __init__
    self.ds.init( self.default_cell )
  File "build/bdist.linux-x86_64/egg/DRMAA.py", line 186, in init
    errParse(eno, estr)
  File "build/bdist.linux-x86_64/egg/DRMAA.py", line 167, in errParse
    else: raise _errindex[errno-_errMin](errstring)
InternalError: cl_com_setup_commlib failed: timeout while waiting for thread start Exception DRMAA.NoActiveSessionError: NoActiveSessionError('',) in <bound method Session.__del__ of <DRMAA.Session object at 0x4ecfb50>> ignored


--
Dipl.-Inf. (Bioinf.) Johannes Eichner
Univ. Tuebingen, WSI-RA, Sand 1, D-72076 Tuebingen, Germany
Phone: (+49/0) 7071 / 29 78970  Fax: (+49/0) 7071 / 29 5091

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