Galaxy July 20, 2012 Distribution & News Brief
*Complete News Brief
*Freebayes *has moved from the /Galaxy distribution to the Galaxy's
Main Tool Shed/
*EMBOSS* version 5.0.0 tool dependencies in the emboss_5 repository
of the Galaxy Main Tool Shed updated to include information for
*Tool Shed* now also supports specifying the third party tool
dependencies to be automatically installed in new repositories
*Admin Genome Indexing* is now in /BETA/. Download, index, and track
progress right from the admin UI!
*Improved Error Handling* that captures EXIT codes, STDOUT, and
STDERR from tools in XML. Be sure to read full details.
*TopHat2/Bowtie2* latest support includes option to 'report
discordant pairs', updated tests, and more preset options.
*Trackster* new parameter space visualization. /Includes BRAND NEW
Features!!/ More details coming soon, but give a test drive now.
new: % hg clone http://www.bx.psu.edu/hg/galaxy galaxy-dist
upgrade: % hg pull -u -r ec29ce8e27a1
*Thanks for using Galaxy!*
We hope to see everyone in /Chicago/ @ *GCC2012*!!
The Galaxy Team
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