Hi Dan,

It works like a charm! Thanks a lot! I have been looking for a workaround for 
this issue for almost a month!

Once again, thanks you so much!

David


Subject: Re: [galaxy-dev] Upload issue in local installation
From: d...@bx.psu.edu
Date: Fri, 3 Aug 2012 09:24:43 -0400
CC: bat...@gmail.com; galaxy-dev@lists.bx.psu.edu
To: david_roq...@hotmail.com

Hi David and Bastal,
We have been able to reproduce this behavior under certain conditions and are 
working on a fix. Until this fix is available, you can disable ajax uploads, 
which should allow the upload tool to work properly.In 
tools/data_source/upload.xml change
<param name="file_data" type="file" size="30" label="File" ajax-upload="true" 
help="TIP: Due to browser limitations, uploading files larger than 2GB is 
guaranteed to fail.  To upload large files, use the URL method (below) or FTP 
(if enabled by the site administrator).">
to
<param name="file_data" type="file" size="30" label="File" ajax-upload="False" 
help="TIP: Due to browser limitations, uploading files larger than 2GB is 
guaranteed to fail.  To upload large files, use the URL method (below) or FTP 
(if enabled by the site administrator).">

Please let us know if this workaround doesn't work for you.

Thanks for using Galaxy,
Dan

On Aug 3, 2012, at 4:20 AM, David Roquis wrote:Hi Batsal,

I have the exact same problem, on 2 different instances of Galaxy, on two 
different servers. I can replicate this problem on a cloned instance with no 
modification, and one using multiple galaxay server, nginx proxy and 
postgresql, both instances being on different machines (one on fedora 13, the 
other one on fedora 17). From what I have seen, it seems to be browser related. 
I can sometimes (rarely) upload data with firefox, chrome or safary, but for me 
it has worked ALL the time using internet explorer 8/9. The thing is that when 
you start the upload, the browser shows you that it is uploaded, but the 
upload.py script is never launched, and hence, the upload seems to be running 
forever. Seems we are not the only ones with this problem, but no real solution 
until now.

Two options for you at the moment
- try using IE 8/9 to upload the data
- upload your data using data libraries under the admin menu (this works on any 
browser).

Keep me in touch if you find a solution

David



> From: bat...@gmail.com
> Date: Thu, 2 Aug 2012 15:48:40 -0400
> To: galaxy-dev@lists.bx.psu.edu
> Subject: [galaxy-dev] Upload issue in local installation
> 
> I installed galaxy locally in a linux server. However, I cannot upload the 
> files (no matter how small, I have tried few kb size fasta files). When I try 
> to upload, the link to the file shows up in the History and gets a new number 
> (purple box). When I click on the link I get 'Dataset is uploading' forever. 
> 
> In the terminal window where I start galaxy, I get the following error report:
> 
> 92.17.41.13 - - [02/Aug/2012:15:33:32 -0400] "GET / HTTP/1.1" 200 - "-" 
> "Mozilla/5.0 (Windows NT 5.2; rv:13.0) Gecko/20100101 Firefox/13.0.1"
> 92.17.41.13 - - [02/Aug/2012:15:33:32 -0400] "GET /root/tool_menu HTTP/1.1" 
> 200 - "http://redhat:8080/"; "Mozilla/5.0 (Windows NT 5.2; rv:13.0) 
> Gecko/20100101 Firefox/13.0.1"
> 92.17.41.13 - - [02/Aug/2012:15:33:32 -0400] "GET /history HTTP/1.1" 200 - 
> "http://redhat:8080/"; "Mozilla/5.0 (Windows NT 5.2; rv:13.0) Gecko/20100101 
> Firefox/13.0.1"
> 92.17.41.13 - - [02/Aug/2012:15:33:33 -0400] "POST /root/user_get_usage 
> HTTP/1.1" 200 - "http://redhat:8080/history"; "Mozilla/5.0 (Windows NT 5.2; 
> rv:13.0) Gecko/20100101 Firefox/13.0.1"
> 92.17.41.13 - - [02/Aug/2012:15:33:40 -0400] "GET 
> /tool_runner?tool_id=upload1 HTTP/1.1" 200 - 
> "http://redhat:8080/root/tool_menu"; "Mozilla/5.0 (Windows NT 5.2; rv:13.0) 
> Gecko/20100101 Firefox/13.0.1"
> 92.17.41.13 - - [02/Aug/2012:15:33:59 -0400] "POST 
> /tool_runner/upload_async_create HTTP/1.1" 200 - "http://redhat:8080/"; 
> "Mozilla/5.0 (Windows NT 5.2; rv:13.0) Gecko/20100101 Firefox/13.0.1"
> 92.17.41.13 - - [02/Aug/2012:15:33:59 -0400] "GET 
> /tool_runner/upload_async_message HTTP/1.1" 200 - "http://redhat:8080/"; 
> "Mozilla/5.0 (Windows NT 5.2; rv:13.0) Gecko/20100101 Firefox/13.0.1"
> 92.17.41.13 - - [02/Aug/2012:15:33:59 -0400] "GET /history HTTP/1.1" 200 - 
> "http://redhat:8080/tool_runner/upload_async_message"; "Mozilla/5.0 (Windows 
> NT 5.2; rv:13.0) Gecko/20100101 Firefox/13.0.1"
> 92.17.41.13 - - [02/Aug/2012:15:33:59 -0400] "POST /root/user_get_usage 
> HTTP/1.1" 200 - "http://redhat:8080/history"; "Mozilla/5.0 (Windows NT 5.2; 
> rv:13.0) Gecko/20100101 Firefox/13.0.1"
> 92.17.41.13 - - [02/Aug/2012:15:34:04 -0400] "POST /root/history_item_updates 
> HTTP/1.1" 200 - "http://redhat:8080/history"; "Mozilla/5.0 (Windows NT 5.2; 
> rv:13.0) Gecko/20100101 Firefox/13.0.1"
> 92.17.41.13 - - [02/Aug/2012:15:34:08 -0400] "POST /root/history_item_updates 
> HTTP/1.1" 200 - "http://redhat:8080/history"; "Mozilla/5.0 (Windows NT 5.2; 
> rv:13.0) Gecko/20100101 Firefox/13.0.1"
> 
> 
> The last line keeps going for ever... writes new line every 4 secs.
> 
> I am stuck and don't know where to look. Please help.
> 
> Batsal.
> 
> 
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