I am getting troubles when I try running our galaxy instance as a daemon
service in ubuntu, using the procedure provided by James Casbon and
available in the /contrib galaxy directory (briefly, installing
the galaxy.debian-init in the /etc/init.d directory)
Everything is OK, *except* that third party softwares that are installed in
/bin of the galaxy home directory fail.
I suspect a problem of $PATH when the service is launched with the command :
start-stop-daemon --chuid $USER --group $GROUP --start --make-pidfile \
--pidfile $PIDFILE --background --chdir $DIR --exec $PYTHON --
in the James bash script.
However, R scripts for instance are run correctly.
Taking this observation into account, we added /home/galaxy/bin in the
unfortunately without success.
Any advices for fixing this irritating bug is welcome !
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