Hi everybody,

I am getting troubles when I try running our galaxy instance as a daemon
service in ubuntu, using the procedure provided by James Casbon and
available in the /contrib galaxy directory (briefly, installing
the galaxy.debian-init in the /etc/init.d directory)
Everything is OK, *except* that third party softwares that are installed in
/bin of the galaxy home directory fail.
I suspect a problem of $PATH when the service is launched with the command :
start-stop-daemon --chuid $USER --group $GROUP --start --make-pidfile \
             --pidfile $PIDFILE --background --chdir $DIR --exec $PYTHON --
$OPTS;
in the James bash script.
However, R scripts for instance are run correctly.
Taking this observation into account, we added /home/galaxy/bin in the
/etc/environment
unfortunately without success.

Any advices for fixing this irritating bug is welcome !

Chris
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

  http://lists.bx.psu.edu/

Reply via email to