On Oct 19, 2012, at 9:35 AM, Carlos Borroto <carlos.borr...@gmail.com> wrote:
> On Fri, Oct 19, 2012 at 12:00 AM, Fields, Christopher J > <cjfie...@illinois.edu> wrote: >> >> My local one is set up like this and it works (for augustus): >> >> toolshed.g2.bx.psu.edu/repos/bjoern-gruening/augustus/augustus/0.1 = >> pbs:///default/-l ncpus=1,mem=8gb,walltime=24:00:00/ >> >> The above is the path in within the shed repo. >> >> chris > > Hi Chris, > > This was quite helpful, although I don't know what you mean by "path > in within the shed repo". Apologies, not enough caffeine. But you seemed to work it out, so it all came together in the end :) > The tool I was trying to specify a runner > for is "ncbi_blastn_wrapper" form the "ncbi_blast_plus" repository. > This is the past to the tool under the local "shed_tools" directory: > shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/9d5beacae92b/ncbi_blast_plus/tools/ncbi_blast_plus/ncbi_blastn_wrapper.xml > > I did however, now that I see what is the overall look of IDs in these > cases, find a way to come up with the correct ID. I put a job to run > and looked in "Admin/Manage jobs", the column "Tool" displays the > correct ID of the tool running. In my case it ended being: > toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.0.13 > > Thanks a lot for giving me a good hint of what to look for!, > Carlos It would be nice to have a shorter alias for these, but maybe that's not possible at the moment. chris ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
