Well is not my page, I'm not directly related to Galaxy. Still, I
think Galaxy Project would be happy to receive updates to the wiki,
maybe a complete table can be added to the page you are mentioning.

On Thu, Nov 1, 2012 at 4:27 AM, Andreas Kuntzagk
<andreas.kuntz...@mdc-berlin.de> wrote:
> Hi,
> thank you for the pointer.
> I was only looking at this wiki page:
> http://wiki.g2.bx.psu.edu/Admin/Data%20Integration
> Maybe this should point to your page?
> regards, Andreas
> On 31.10.2012 17:50, Carlos Borroto wrote:
>> On Wed, Oct 31, 2012 at 11:30 AM, Andreas Kuntzagk
>> <andreas.kuntz...@mdc-berlin.de> wrote:
>>> Hi,
>>> I'm still setting up a local galaxy. Currently I'm testing the setup of
>>> NGS
>>> tools. If I try "SAM to BAM" for a BAM file that has "hg18" set as build
>>> I
>>> get a message that
>>> "Sequences are not currently available for the specified build." I guess
>>> that I have either to manipulate one of the .loc files (but which?) or
>>> have
>>> to download additional data from rsync server.
>>> (I already have the tool-data/shared/hg18 completely)
>> The .loc file you want to modify is 'tool-data/sam_fa_indices.loc'.
>> You can find information about this subject in the wiki[1]. Although
>> the table there is not complete, so you could always find the right
>> xml under 'tools' and poke inside to find a line like this one:
>> <validator type="dataset_metadata_in_file"
>> filename="sam_fa_indices.loc" metadata_name="dbkey"
>> metadata_column="1" message="Sequences are not currently available for
>> the specified build." line_startswith="index" />
>> [1]http://wiki.g2.bx.psu.edu/Admin/NGS%20Local%20Setup
>> And I agree, dealing with .loc files is quite cumbersome.
>> Hope it helps,
>> Carlos
> --
> Andreas Kuntzagk
> SystemAdministrator
> Berlin Institute for Medical Systems Biology at the
> Max-Delbrueck-Center for Molecular Medicine
> Robert-Roessle-Str. 10, 13125 Berlin, Germany
> http://www.mdc-berlin.de/en/bimsb/BIMSB_groups/Dieterich
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