I would like to recall the previous email. The error does happen even
with 'use_tasked_jobs' set to false. It looks like I have some issues
with my local torque install that I need to resolve.
Thanks and sorry,
Carlos
On Mon, Nov 19, 2012 at 11:23 AM, Carlos Borroto
<carlos.borr...@gmail.com> wrote:
> I want to add that this issue doesn't show up if I turn off
> 'use_tasked_jobs' for jobs splitting. I realize this feature is marked
> as not ready for production. I will stay away from it for the time
> being.
>
> Thanks,
> Carlos
>
> On Fri, Nov 16, 2012 at 5:13 PM, Carlos Borroto
> <carlos.borr...@gmail.com> wrote:
>> Hi all,
>>
>> I ran into this error while uploading a ~300mb file. I'm using latest
>> galaxy-dist, Apache proxy and Torque/Maui throught DRMAA. After this
>> error appear in the log, the dataset stays in grey. If I restart the
>> galaxy daemon, the job gets correctly submitted.
>>
>> galaxy.jobs.runners.drmaa ERROR 2012-11-16 16:29:49,833 Uncaught
>> exception queueing job
>> Traceback (most recent call last):
>> File "/local/opt/galaxy/galaxy-dist/lib/galaxy/jobs/runners/drmaa.py",
>> line 145, in run_next
>> self.queue_job( obj )
>> File "/local/opt/galaxy/galaxy-dist/lib/galaxy/jobs/runners/drmaa.py",
>> line 233, in queue_job
>> job_id = self.ds.runJob(jt)
>> File "build/bdist.linux-x86_64/egg/drmaa/__init__.py", line 331, in runJob
>> _h.c(_w.drmaa_run_job, jid, _ct.sizeof(jid), jobTemplate)
>> File "build/bdist.linux-x86_64/egg/drmaa/helpers.py", line 213, in c
>> return f(*(args + (error_buffer, sizeof(error_buffer))))
>> File "build/bdist.linux-x86_64/egg/drmaa/errors.py", line 90, in
>> error_check
>> raise _ERRORS[code-1]("code %s: %s" % (code, error_buffer.value))
>> InternalException: code 1: pbs-drm: unknown error
>>
>> The same error happens even if I don't upload the file directly but
>> use something like scp. Another file of only a few kbs doesn't show
>> this behavior. I have the feeling this might be a memory issue, as the
>> box running galaxy has only 2gb of RAM.
>>
>> Please let me know if there is something else I could do to help
>> figuring out this issue.
>>
>> Thanks,
>> Carlos
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