Hi Tan,
If you go into your tool xml file I think you will find a tag error the
traceback. Something like type=select you may have put thype a simple
typo.
Happy Holidays
James Boocock
On Sat, 2012-12-29 at 16:36 +0800, Tan Jun wrote:
> Hi, all
> I'm new here.
> These days I'm trying to add a tool in Galaxy, as showed in
> screencast.
> I did the same thing with that in screencast. But an error occurred.
> The error says:
> tool error
> An error occurred running this job:failure preparing job
>
> The message in the terminal says:
> galaxy.jobs.handler DEBUG 2012-12-29 15:54:25,504 dispatching job 7
> to local runner
> galaxy.jobs.handler INFO 2012-12-29 15:54:25,733 (7) Job dispatched
> galaxy.jobs.runners.local DEBUG 2012-12-29 15:54:25,818 Local runner:
> starting job 7
> galaxy.jobs.runners.local ERROR 2012-12-29 15:54:26,061 failure
> running job 7
> Traceback (most recent call last):
> File
> "/home/tanjun/galaxy/galaxy-galaxy-dist-36ad8aa7b922/lib/galaxy/jobs/runners/local.py",
> line 72, in run_job
> job_wrapper.prepare()
> File
> "/home/tanjun/galaxy/galaxy-galaxy-dist-36ad8aa7b922/lib/galaxy/jobs/__init__.py",
> line 180, in prepare
> config_filenames = self.tool.build_config_files( param_dict,
> self.working_directory )
> File
> "/home/tanjun/galaxy/galaxy-galaxy-dist-36ad8aa7b922/lib/galaxy/tools/__init__.py",
> line 2430, in build_config_files
> f.write( fill_template( template_text, context=param_dict ) )
> File
> "/home/tanjun/galaxy/galaxy-galaxy-dist-36ad8aa7b922/lib/galaxy/util/template.py",
> line 9, in fill_template
> return str( Template( source=template_text, searchList=[context] )
> )
> File
> "/home/tanjun/galaxy/galaxy-galaxy-dist-36ad8aa7b922/eggs/Cheetah-2.2.2-py2.7-linux-x86_64-ucs4.egg/Cheetah/Template.py",
> line 1004, in __str__
> return getattr(self, mainMethName)()
> File
> "cheetah_DynamicallyCompiledCheetahTemplate_1356767666_06_36079.py",
> line 149, in respond
> KeyError: 'thype'
> 127.0.0.1 - - [29/Dec/2012:15:54:27 +0800]
> "GET /api/histories/f597429621d6eb2b HTTP/1.1" 200 -
> "http://localhost:8080/history"; "Mozilla/5.0 (X11; Linux x86_64)
> AppleWebKit/535.19 (KHTML, like Gecko) Ubuntu/11.10
> Chromium/18.0.1025.168 Chrome/18.0.1025.168 Safari/535.19"
> 127.0.0.1 - - [29/Dec/2012:15:54:27 +0800]
> "GET /api/histories/f597429621d6eb2b/contents?ids=ebfb8f50c6abde6d
> HTTP/1.1" 200 - "http://localhost:8080/history"; "Mozilla/5.0 (X11;
> Linux x86_64) AppleWebKit/535.19 (KHTML, like Gecko) Ubuntu/11.10
> Chromium/18.0.1025.168 Chrome/18.0.1025.168 Safari/535.19"
>
> Could anybody help me?
> Thanks!
>
>
>
> ______________________________________________________________________
> ===================================================
> Regards!
> School of Computer Engineering and Science Shanghai University,
> Shanghai China
> Tan Jun
> 谭军
> ___________________________________________________________
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