[galaxy-dev] Error trying to see the installed dependency in Galaxy for PICARD

[Anthonius deBoer]

Hi,

I installed PICARD from the main tool shed in the latest update from galaxy-dist and when I clicked on the picard installed dependency link in the admin tool, I got this...

Error Traceback:

View as:   Interactive  |  Text  |  XML (full)

⇝ TypeError: 'NoneType' object is not iterable

URL: http://srv151/admin_toolshed/browse_tool_dependency?repository_id=a799d38679e985db&id=f597429621d6eb2b

Module weberror.evalexception.middleware:364 in respond          view
>>  app_iter = self.application(environ, detect_start_response)

Module paste.debug.prints:98 in __call__          view
>>  environ, self.app)

Module paste.wsgilib:539 in intercept_output          view
>>  app_iter = application(environ, replacement_start_response)

Module paste.recursive:80 in __call__          view
>>  return self.application(environ, start_response)

Module galaxy.web.framework.middleware.remoteuser:91 in __call__          view
>>  return self.app( environ, start_response )

Module paste.httpexceptions:632 in __call__          view
>>  return self.application(environ, start_response)

Module galaxy.web.framework.base:160 in __call__          view
>>  body = method( trans, **kwargs )

Module galaxy.web.framework:206 in decorator          view
>>  return func( self, trans, *args, **kwargs )

Module galaxy.webapps.galaxy.controllers.admin_toolshed:422 in browse_tool_dependency          view
>>  tool_dependency.error_message = suc.to_safe_string( tool_dependency.error_message )

Module galaxy.util.shed_util_common:2138 in to_safe_string          view
>>  for c in text:

TypeError: 'NoneType' object is not iterable

Extra Features

>>	Display the lines of code near each part of the traceback
	Show a debug prompt to allow you to directly debug the code at the traceback

I also found I always have to restart GALAXY after I install something from the toolshed otherwise I get this:

Tool 'toolshed.g2.bx.psu.edu/repos/brad-chapman/bam_to_bigwig/bam_to_bigwig/0.1.0' does not exist, kwd={}

I have to restart galaxy (updating the metadata in the admin does not fix this..)

Any ideas?

Thon

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