Hello,

When we run "Realigner Target Creator <http://sigenae-workbench.toulouse.inra.fr/galaxy/tool_runner?tool_id=gatk_realigner_target_creator> for use in local realignment" , I have this error :


*Dataset 19: Realigner Target Creator on data 5, data 6, and data 4 (GATK intervals)*

Tool execution generated the following error message:

Could not create the Java virtual machine.
The tool produced the following additional output:

Epilog : job finished at jeu. janv. 10 14:49:10 CET 2013
So I have addded java -Xmx4G " in realigner_target_creator.xml file but the problem is not solved.

Do you have any idea ??

Thanks in advance,
Sarah
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