I submitted a trello "ticket" [(https://trello.com/c/6vxkqdjT) regarding
this, but wanted to make sure I brought it to someone's attention (it's
causing me some queue issues with my instance of galaxy).
When registered_user_job_limit and anonymous_user_job_limit are set in
universe.wsgi jobs cannot be run, instead the following error occurs:
galaxy.jobs.handler ERROR 2012-12-04 12:44:51,869 failure running job 22396
Traceback (most recent call last):
File "/data/local/galaxy/galaxy-prod/lib/galaxy/jobs/handler.py",
line 183, in __monitor_step
job_state = self.__check_if_ready_to_run( job )
File "/data/local/galaxy/galaxy-prod/lib/galaxy/jobs/handler.py",
line 253, in __check_if_ready_to_run
state = self.__check_user_jobs( job )
File "/data/local/galaxy/galaxy-prod/lib/galaxy/jobs/handler.py",
line 274, in __check_user_jobs
if not self.user_job_count:
AttributeError: 'JobHandlerQueue' object has no attribute 'user_job_count'
Commenting out the lines for registered_user_job_limit and
anonymous_user_job_limit in universe.wsgi allows job to be queue one again.
It looks like this is due to the fact that
`self.__clear_user_job_count()` on line 159 of `handler.py` is only
called when jobs are tracked in the database. If jobs are not tracked in
the database (as in my case), the error occurs. Perhaps the fix would be
to simply move the call outside the `if` block.
It appears this was broken in the 2012-11-13 revision (73e05bc).
--
Lance Parsons - Scientific Programmer
134 Carl C. Icahn Laboratory
Lewis-Sigler Institute for Integrative Genomics
Princeton University
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