No.  When I save the file I wish to manipulate from my local galaxy and upload 
it to the public galaxy and run "Compute" it works (i.e. a tab-delimited file 
is produced with the computed field occurring last, the job listing in the 
history is green, and the result is available for input into other tools).  
When I run it on my local galaxy a file is produced that has the computed field 
last ( which is accurately computed but it appears that the white space between 
it and the other columns appears to be possibly only a space and not a tab), no 
error is reported but the job listing in the history is red, and the output is 
not available for input into other tools.  I've tried this on other 
tab-delimited files and it does the same thing.

Mark



From: Jeremy Goecks [mailto:jeremy.goe...@emory.edu]
Sent: Monday, January 14, 2013 12:58 PM
To: Rose Mark USRE
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] text manipulation Compute tool error

Can you reproduce this behavior on our public server? If so, it'll be much 
easier for us to take a look at the issue.

If you can't reproduce on our public server, then providing as many details as 
possible about the problem will provide the best chance for the list to help 
you. For instance:

*what is the exact error that the tool is returning?
*does it happen with all datasets or a particular dataset?
*does it happen with all dataset types (e.g., interval, bed, gtf) or just some?

Thanks,
J.


On Jan 14, 2013, at 11:46 AM, 
<mark.r...@syngenta.com<mailto:mark.r...@syngenta.com>> wrote:


I've received no replies to this post though clearly I must be doing something 
wrong since the tool would be useless if this were its normal behavior and 
judging from other posts people are using it.  Please help.

Thanks

Mark

From: 
galaxy-dev-boun...@lists.bx.psu.edu<mailto:galaxy-dev-boun...@lists.bx.psu.edu> 
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of 
mark.r...@syngenta.com<mailto:mark.r...@syngenta.com>
Sent: Sunday, January 06, 2013 4:32 PM
To: galaxy-dev@lists.bx.psu.edu<mailto:galaxy-dev@lists.bx.psu.edu>
Subject: [galaxy-dev] text manipulation Compute tool error

Hello

On a local install of galaxy I am getting seemingly erroneous behavior from the 
 text manipulation tool "Compute".  It will compute the expression I set 
(c3-c2+1) but will concatenate it to the last column rather that create a new 
column. Also the job errors and is shown in red. I can get around the 
concatenation problem by using the Add Column tool but subsequent use of 
Compute also errors and its results are unavailable for further analysis though 
the output appears correct.

Can you help?

Mark



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