It appears that the manager process could not be started:
Starting server in PID 28704.
Traceback (most recent call last):
File "./scripts/paster.py", line 34, in <module>
command.run()
File
"/home/galaxy/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py",
line 84, in run
invoke(command, command_name, options, args[1:])
File
"/home/galaxy/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py",
line 123, in invoke
exit_code = runner.run(args)
File
"/home/galaxy/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py",
line 218, in run
result = self.command()
File
"/home/galaxy/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/serve.py",
line 303, in command
serve()
File
"/home/galaxy/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/serve.py",
line 287, in serve
server(app)
File
"/home/galaxy/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py",
line 151, in server_wrapper
**context.local_conf)
File
"/home/galaxy/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/util/fixtypeerror.py",
line 57, in fix_call
val = callable(*args, **kw)
File
"/home/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpserver.py",
line 1314, in server_runner
serve(wsgi_app, **kwargs)
File
"/home/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpserver.py",
line 1264, in serve
threadpool_options=threadpool_options)
File
"/home/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpserver.py",
line 1114, in __init__
RequestHandlerClass, ssl_context)
File
"/home/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpserver.py",
line 1094, in __init__
RequestHandlerClass, ssl_context)
File
"/home/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpserver.py",
line 358, in __init__
HTTPServer.__init__(self, server_address, RequestHandlerClass)
File "/usr/lib64/python2.6/SocketServer.py", line 402, in __init__
self.server_bind()
File "/usr/lib64/python2.6/BaseHTTPServer.py", line 108, in server_bind
SocketServer.TCPServer.server_bind(self)
File "/usr/lib64/python2.6/SocketServer.py", line 413, in server_bind
self.socket.bind(self.server_address)
File "<string>", line 1, in bind
socket.gaierror: [Errno -2] Name or service not known
galaxy.jobs.manager INFO 2013-01-24 14:05:22,524 sending stop signal to
worker thread
galaxy.jobs.manager INFO 2013-01-24 14:05:22,524 job manager queue stopped
galaxy.jobs.manager INFO 2013-01-24 14:05:22,524 sending stop signal to
worker thread
galaxy.jobs.manager INFO 2013-01-24 14:05:22,524 job manager stop queue
stopped
Removing PID file manager.pid
Any ideas?
Thanks,
Joachim
Joachim Jacob
Rijvisschestraat 120, 9052 Zwijnaarde
Tel: +32 9 244.66.34
Bioinformatics Training and Services (BITS)
http://www.bits.vib.be
@bitsatvib
On 01/22/2013 02:00 PM, Joachim Jacob |VIB| wrote:
Hi all,
After updating to the latest Galaxy dist-release (and moving our
server to a new location - but this can not be the reason I think),
the status of the jobs are not being updated. The box in the history
stays grey. After restarting Galaxy or the server, the correct status
of the job is displayed.
Any advice on how to proceed is appreciated.
Thanks,
Joachim
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