It appears that the manager process could not be started:

Starting server in PID 28704.
Traceback (most recent call last):
  File "./scripts/paster.py", line 34, in <module>
    command.run()
File "/home/galaxy/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py", line 84, in run
    invoke(command, command_name, options, args[1:])
File "/home/galaxy/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py", line 123, in invoke
    exit_code = runner.run(args)
File "/home/galaxy/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py", line 218, in run
    result = self.command()
File "/home/galaxy/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/serve.py", line 303, in command
    serve()
File "/home/galaxy/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/serve.py", line 287, in serve
    server(app)
File "/home/galaxy/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py", line 151, in server_wrapper
    **context.local_conf)
File "/home/galaxy/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/util/fixtypeerror.py", line 57, in fix_call
    val = callable(*args, **kw)
File "/home/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpserver.py", line 1314, in server_runner
    serve(wsgi_app, **kwargs)
File "/home/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpserver.py", line 1264, in serve
    threadpool_options=threadpool_options)
File "/home/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpserver.py", line 1114, in __init__
    RequestHandlerClass, ssl_context)
File "/home/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpserver.py", line 1094, in __init__
    RequestHandlerClass, ssl_context)
File "/home/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpserver.py", line 358, in __init__
    HTTPServer.__init__(self, server_address, RequestHandlerClass)
  File "/usr/lib64/python2.6/SocketServer.py", line 402, in __init__
    self.server_bind()
  File "/usr/lib64/python2.6/BaseHTTPServer.py", line 108, in server_bind
    SocketServer.TCPServer.server_bind(self)
  File "/usr/lib64/python2.6/SocketServer.py", line 413, in server_bind
    self.socket.bind(self.server_address)
  File "<string>", line 1, in bind
socket.gaierror: [Errno -2] Name or service not known
galaxy.jobs.manager INFO 2013-01-24 14:05:22,524 sending stop signal to worker thread
galaxy.jobs.manager INFO 2013-01-24 14:05:22,524 job manager queue stopped
galaxy.jobs.manager INFO 2013-01-24 14:05:22,524 sending stop signal to worker thread galaxy.jobs.manager INFO 2013-01-24 14:05:22,524 job manager stop queue stopped
Removing PID file manager.pid


Any ideas?


Thanks,
Joachim



Joachim Jacob

Rijvisschestraat 120, 9052 Zwijnaarde
Tel: +32 9 244.66.34
Bioinformatics Training and Services (BITS)
http://www.bits.vib.be
@bitsatvib

On 01/22/2013 02:00 PM, Joachim Jacob |VIB| wrote:
Hi all,


After updating to the latest Galaxy dist-release (and moving our server to a new location - but this can not be the reason I think), the status of the jobs are not being updated. The box in the history stays grey. After restarting Galaxy or the server, the correct status of the job is displayed.

Any advice on how to proceed is appreciated.


Thanks,
Joachim





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