Hi Eric, The threading.Thread issue indicated below has been fixed (the changeset is already available in galaxy-dist) and isn't eclipse-centric.
>From eclipse, how are you launching galaxy? Personally for debugging I've found it easier to use the debugging middleware for anything that happens inside a web transaction (sometimes intentionally raising an exception just to kick out to it), and a simple addition of 'import pdb; pdb.set_trace()' for creating breakpoints that I can work through via pdb in the terminal. -Dannon On Feb 5, 2013, at 5:29 AM, Eric Kuyt <eric.ku...@wur.nl> wrote: > Hi All, > > I am Running my local galaxy instance in Eclipse - pydev to make debugging > somewhat easier, but now I run into loads of Code errors. It seems that pydev > doesn't understand the Bunch() Class frequently used in Galaxy. > > But also code errors that maybe could be fixed. such as: > > lib/galaxy/jobs/runner/lwr.py:232 > > #worker = threading.Thread( ( name="LwrJobRunner.thread-%d" % i ), # > target=self.run_next ) > --> > #worker = threading.Thread( name="LwrJobRunner.thread-%d" % i , > #target=self.run_next ) > > Are these real errors or am I doing something wrong. > > Is there anyone with more experience in running Galaxy from within Eclipse? > > Thanks, > > Eric > > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
