Hi guys, I'm trying to run MACS in my local galaxy install (see screenshot: http://snag.gy/5QGUH.jpg)
And I'm getting this error: Usage: macs <-t tfile> [-n name] [-g genomesize] [options] Example: macs -t ChIP.bam -c Control.bam -f BAM -g h -n test -w --call-subpeaks macs: error: no such option: --lambdaset Thanks in advance for any help. -Greg Here's how I installed Macs (I guess it doesn't come built in?) > cd /usr/local/galaxy/downloads/ > wget https://github.com/downloads/taoliu/MACS/MACS-1.4.2-1.tar.gz > tar -xzvf MACS-1.4.2-1.tar.gz > cd MACS-1.4.2 > source /usr/local/galaxy/job_environment_setup_file > python setup.py install > deactivate > cd /misc/local/galaxy/galaxy_python/bin > ln -s macs14 macs (and made sure /misc/local/galaxy/galaxy_python/bin is on the galaxy user's path) ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
