I am trying to setup my galaxy system to allow jobs to be submitted as the
real user, since people want to keep an eye on their job on the cluster
sometimes and they have no ideas which ones are theirs.
I tried the approach on the wiki here:
but unfortunately, the CHOWN command is not allowed, not even as a sudo
Probably has to do with the fact that we run our cluster from an isilon
system, which I assume is pretty typical.
The job was actually successfully submitted as the intended user, so that
part works, but if we can just get it to work without having to rely on
chown that would be awesome.
Can someone point me in the right direction?
Here's the error.
galaxy.jobs.runners.local DEBUG 2013-02-19 19:35:31,524 execution of
external set_meta for job 148 finished
galaxy.jobs DEBUG 2013-02-19 19:35:31,576 (148) Changing ownership of
working directory with: /usr/bin/sudo -E scripts/external_chown_script.py
48 svcgalaxy 10000
galaxy.jobs ERROR 2013-02-19 19:35:31,653 (148) Failed to change ownership
Traceback (most recent call last):
343, in finish
916, in reclaim_ownership
self._change_ownership( self.galaxy_system_pwent, str(
self.galaxy_system_pwent ) )
902, in _change_ownership
assert p.returncode == 0
galaxy.jobs DEBUG 2013-02-19 19:35:31,722 fail(): Moved
galaxy.datatypes.metadata DEBUG 2013-02-19 19:35:31,924 Cleaning up external
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