Hi Dan:
I've transplanted that fix - looks good in workflow editing.
When i try to run the workflow though, I get this stack  trace:

URL: http://galaxy.neb.com/workflow/run?id=b3c161103f7e2a00
File 
'/mnt/ngswork/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/exceptions/errormiddleware.py',
 line 143 in __call__
  app_iter = self.application(environ, start_response)
File 
'/mnt/ngswork/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', 
line 80 in __call__
  return self.application(environ, start_response)
File 
'/mnt/ngswork/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/remoteuser.py',
 line 91 in __call__
  return self.app( environ, start_response )
File 
'/mnt/ngswork/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py',
 line 632 in __call__
  return self.application(environ, start_response)
File '/mnt/ngswork/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 
132 in __call__
  return self.handle_request( environ, start_response )
File '/mnt/ngswork/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 
185 in handle_request
  body = method( trans, **kwargs )
File 
'/mnt/ngswork/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/workflow.py',
 line 1514 in run
  enable_unique_defaults=trans.app.config.enable_unique_workflow_defaults)
File '/mnt/ngswork/galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py', 
line 848 in fill_template
  return self.fill_template_mako( filename, **kwargs )
File '/mnt/ngswork/galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py', 
line 859 in fill_template_mako
  return template.render( **data )
File 
'/mnt/ngswork/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/template.py', 
line 296 in render
  return runtime._render(self, self.callable_, args, data)
File 
'/mnt/ngswork/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/runtime.py', 
line 660 in _render
  **_kwargs_for_callable(callable_, data))
File 
'/mnt/ngswork/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/runtime.py', 
line 692 in _render_context
  _exec_template(inherit, lclcontext, args=args, kwargs=kwargs)
File 
'/mnt/ngswork/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/runtime.py', 
line 718 in _exec_template
  callable_(context, *args, **kwargs)
File 
'/mnt/ngswork/galaxy/galaxy-dist/database/compiled_templates/base.mako.py', 
line 42 in render_body
  __M_writer(unicode(next.body()))
File 
'/mnt/ngswork/galaxy/galaxy-dist/database/compiled_templates/workflow/run.mako.py',
 line 171 in render_body
  __M_writer(unicode(do_inputs( tool.inputs, step.state.inputs, errors.get( 
step.id, dict() ), "", step, None, used_accumulator )))
File 
'/mnt/ngswork/galaxy/galaxy-dist/database/compiled_templates/workflow/run.mako.py',
 line 40 in do_inputs
  return 
render_do_inputs(context.locals_(__M_locals),inputs,values,errors,prefix,step,other_values,already_used)
File 
'/mnt/ngswork/galaxy/galaxy-dist/database/compiled_templates/workflow/run.mako.py',
 line 429 in render_do_inputs
  __M_writer(unicode(do_inputs( input.cases[ current_case ].inputs, 
group_values, group_errors, new_prefix, step, other_values, already_used )))
File 
'/mnt/ngswork/galaxy/galaxy-dist/database/compiled_templates/workflow/run.mako.py',
 line 340 in do_inputs
  return 
render_do_inputs(context,inputs,values,errors,prefix,step,other_values,already_used)
File 
'/mnt/ngswork/galaxy/galaxy-dist/database/compiled_templates/workflow/run.mako.py',
 line 435 in render_do_inputs
  __M_writer(unicode(row_for_param( input, values[ input.name ], other_values, 
errors, prefix, step, already_used )))
File 
'/mnt/ngswork/galaxy/galaxy-dist/database/compiled_templates/workflow/run.mako.py',
 line 338 in row_for_param
  return 
render_row_for_param(context,param,value,other_values,error_dict,prefix,step,already_used)
File 
'/mnt/ngswork/galaxy/galaxy-dist/database/compiled_templates/workflow/run.mako.py',
 line 571 in render_row_for_param
  p_text = p_text.replace(rematch, '<span style="background-color:%s" 
class="wfpspan wf_parm__%s">%s</span>' % (wf_parms[rematch[2:-1]], 
rematch[2:-1], rematch[2:-1]))
KeyError: 'min_insert'


I'll hack a bit on it to see why min_insert is not in wf_params...


Brad
On Mar 15, 2013, at 5:28 PM, Daniel Blankenberg 
<d...@bx.psu.edu<mailto:d...@bx.psu.edu>> wrote:

Hi Brad,

Thanks for reporting this issue. It has been fixed in -central and will be 
available in the next stable release: 
https://bitbucket.org/galaxy/galaxy-central/commits/b9afd514145740b4d5999158d51bd7dc4a409a99


Thanks for using Galaxy,

Dan


On Mar 15, 2013, at 5:04 PM, Langhorst, Brad wrote:

Workflow parameters still seem to be broken for me.

I'm seeing the same problem as Liisa Koski
http://dev.list.galaxyproject.org/Can-t-specify-workflow-parameters-for-integer-values-td4658193.html

(this message comes up when i edit a workflow with ${mininsert} set on a 
bowtie2 job)

Problems were encountered loading this workflow (possibly a result of tool 
upgrades). Please review the following parameters and then save.

  *   Step 9: Bowtie2
     *   Value no longer valid for 'Minimum insert size for valid paired-end 
alignments', replaced with default


but Im running a release release_2013.02.08
and I've verified that this commit is present in the running code

https://bitbucket.org/galaxy/galaxy-central/commits/73bb36c4ee3b34c3ca32ed830b4f91df79b971c5

any ideas?



Brad
--
Brad Langhorst
langho...@neb.com<mailto:langho...@neb.com>





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Brad Langhorst
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