Hi Julien,

This was fixed in changeset 6cd4058d7b32 
(https://bitbucket.org/galaxy/galaxy-dist/commits/6cd4058d7b32/). Can you 
update your Galaxy instance and see if the issue is resolved for you?


Thanks for using Galaxy,

Dan


On Mar 20, 2013, at 4:53 AM, Julien SEILER wrote:

> Hello Carl,
> 
> We are using galaxy-dist on revision a4113cc1cb5e.
> 
> When we talk about private dataset, we mean datasets that have been uploaded 
> to a user history through the Upload file tool. The access permission is 
> allowed only to the current user role for these datasets.
> Anonymous user are not allowed on our galaxy instance.
> 
> Regards,
> 
> Julien
> 
> Le 19 mars 2013 à 22:45, Carl Eberhard <carlfeberh...@gmail.com> a écrit :
> 
>> Hello, Stephanie and Julien
>> 
>> What revision are you using IGBMC? 
>> 
>> Can you clarify what you mean by a private dataset? Are non-owners importing 
>> into a history via a shared history, or are they being passed a direct link 
>> to the UCSC display viewer from the owner?
>> 
>> Thanks for the information,
>> Carl
>> 
>> 
>> 
>> 
>> On Tue, Mar 19, 2013 at 1:27 PM, Stephanie LE GRAS <sleg...@igbmc.fr> wrote:
>> Hi all,
>> 
>> Here is an update regarding the problem we are facing with Julien with our
>> local instance of Galaxy.
>> 
>> As Julien said
>> "we are encountering a problem when trying to use UCSC display application
>> on private dataset.
>> UCSC is giving us the following error message :
>> Unrecognized format line 2 of http://.../galaxy.bed
>> (note: chrom names are case sensitive)"
>> 
>> We have worked for hours on it today and we have identified that datasets
>> that can be uploaded to UCSC are actually public datasets and that Julien
>> can upload all his datasets to UCSC because they are all public by default.
>> 
>> 
>> What is interesting now is that we've seen that the path to the data in
>> the UCSC error message is :
>> 
>> http://www.galaxy-igbmc.fr/display_application/f1cb3a6ff6a93c01/ucsc_interv
>> al_as_bed/main/bea5029fce8b957e/data/galaxy.bed:
>> 
>> 
>> While it should be :
>> 
>> http://www.galaxy-igbmc.fr/display_at(Š)/galaxy.bed
>> 
>> Because the right function to use in order to check whether the dataset
>> can be uploaded to UCSC should be display_at but not display_application.
>> 
>> Any ideas of what could cause Galaxy not to use the right function?
>> 
>> Thank you in advance,
>> 
>> 
>> Stephanie
>> --
>> Stephanie Le Gras
>> Bioinformatics engineer
>> High throughput sequencing platform
>> IGBMC
>> 1, rue Laurent Fries
>> 67404 ILLKIRCH Cedex
>> France
>> Tel. : +33 (0)3 88 65 32 73
>> Tel. Solexa : +33 (0)3 88 65 32 97
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> Le 18/03/13 19:20, « Julien SEILER » <seil...@igbmc.fr> a écrit :
>> 
>> >Hi all,
>> >
>> >We have installed a local galaxy server and we are encountering a problem
>> >when trying to use UCSC display application on private dataset.
>> >UCSC is giving us the following error message :
>> >Unrecognized format line 2 of http://.../galaxy.bed
>> >(note: chrom names are case sensitive)
>> >
>> >Curiously, it works fine with my personal account but it doesn't for all
>> >other users. It also works for displaying tracks based on a public
>> >dataset for all users.
>> >
>> >Could anybody explain us what's happening ?
>> >
>> >Thanks in advance for any help,
>> >
>> >Julien
>> >___________________________________________________________
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>> 
>> 
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> ___________________________________________________________
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