I was able to solve this by setting job state in the database from
queued and running to "failed" for two jobs that had a wrong state after
galaxy-restart.
best,
geert
On 04/02/2013 05:27 PM, Geert Vandeweyer wrote:
Hi,
I'm getting errors in the handler logs after upgrading galaxy stable
to today's release.
I specified the "dynamic" job runner as default, which returns a job
for pbs.
These errors appear as soon as the server is up and running. What
could be the issue here?
galaxy.jobs.runners ERROR 2013-04-02 17:24:23,411 Unhandled exception
checking active jobs
Traceback (most recent call last):
File "/galaxy/galaxy-dist/lib/galaxy/jobs/runners/__init__.py", line
336, in monitor
self.check_watched_items()
File "/galaxy/galaxy-dist/lib/galaxy/jobs/runners/pbs.py", line 382,
in check_watched_items
( failures, statuses ) = self.check_all_jobs()
File "/galaxy/galaxy-dist/lib/galaxy/jobs/runners/pbs.py", line 463,
in check_all_jobs
pbs_server_name =
self.__get_pbs_server(pbs_job_state.job_destination.params)
File "/galaxy/galaxy-dist/lib/galaxy/jobs/runners/pbs.py", line 221,
in __get_pbs_server
return job_destination_params['destination'].split('@')[-1]
KeyError: 'destination'
--
Geert Vandeweyer, Ph.D.
Department of Medical Genetics
University of Antwerp
Prins Boudewijnlaan 43
2650 Edegem
Belgium
Tel: +32 (0)3 275 97 56
E-mail: geert.vandewe...@ua.ac.be
http://ua.ac.be/cognitivegenetics
http://www.linkedin.com/pub/geert-vandeweyer/26/457/726
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
