Dear all,

This error persists in the August release.

To reproduce:

- start workflows (and/or jobs)
- while jobs are running and/or waiting to run : restart galaxy

handler will now give these errors. Deleting the running/waiting jobs and restarting galaxy resolves this.



On 04/03/2013 11:38 AM, Geert Vandeweyer wrote:
I was able to solve this by setting job state in the database from queued and running to "failed" for two jobs that had a wrong state after galaxy-restart.



On 04/02/2013 05:27 PM, Geert Vandeweyer wrote:

I'm getting errors in the handler logs after upgrading galaxy stable to today's release.

I specified the "dynamic" job runner as default, which returns a job for pbs.

These errors appear as soon as the server is up and running. What could be the issue here? ERROR 2013-04-02 17:24:23,411 Unhandled exception checking active jobs
Traceback (most recent call last):
File "/galaxy/galaxy-dist/lib/galaxy/jobs/runners/", line 336, in monitor
File "/galaxy/galaxy-dist/lib/galaxy/jobs/runners/", line 382, in check_watched_items
    ( failures, statuses ) = self.check_all_jobs()
File "/galaxy/galaxy-dist/lib/galaxy/jobs/runners/", line 463, in check_all_jobs pbs_server_name = self.__get_pbs_server(pbs_job_state.job_destination.params) File "/galaxy/galaxy-dist/lib/galaxy/jobs/runners/", line 221, in __get_pbs_server
    return job_destination_params['destination'].split('@')[-1]
KeyError: 'destination'


Geert Vandeweyer, Ph.D.
Department of Medical Genetics
University of Antwerp
Prins Boudewijnlaan 43
2650 Edegem
Tel: +32 (0)3 275 97 56

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