Dear all,
This error persists in the August release.
To reproduce:
- start workflows (and/or jobs)
- while jobs are running and/or waiting to run : restart galaxy
handler will now give these errors. Deleting the running/waiting jobs
and restarting galaxy resolves this.
Best,
Geert
On 04/03/2013 11:38 AM, Geert Vandeweyer wrote:
I was able to solve this by setting job state in the database from
queued and running to "failed" for two jobs that had a wrong state
after galaxy-restart.
best,
geert
On 04/02/2013 05:27 PM, Geert Vandeweyer wrote:
Hi,
I'm getting errors in the handler logs after upgrading galaxy stable
to today's release.
I specified the "dynamic" job runner as default, which returns a job
for pbs.
These errors appear as soon as the server is up and running. What
could be the issue here?
galaxy.jobs.runners ERROR 2013-04-02 17:24:23,411 Unhandled exception
checking active jobs
Traceback (most recent call last):
File "/galaxy/galaxy-dist/lib/galaxy/jobs/runners/__init__.py",
line 336, in monitor
self.check_watched_items()
File "/galaxy/galaxy-dist/lib/galaxy/jobs/runners/pbs.py", line
382, in check_watched_items
( failures, statuses ) = self.check_all_jobs()
File "/galaxy/galaxy-dist/lib/galaxy/jobs/runners/pbs.py", line
463, in check_all_jobs
pbs_server_name =
self.__get_pbs_server(pbs_job_state.job_destination.params)
File "/galaxy/galaxy-dist/lib/galaxy/jobs/runners/pbs.py", line
221, in __get_pbs_server
return job_destination_params['destination'].split('@')[-1]
KeyError: 'destination'
--
Geert Vandeweyer, Ph.D.
Department of Medical Genetics
University of Antwerp
Prins Boudewijnlaan 43
2650 Edegem
Belgium
Tel: +32 (0)3 275 97 56
E-mail: geert.vandewe...@ua.ac.be
http://ua.ac.be/cognitivegenetics
http://www.linkedin.com/pub/geert-vandeweyer/26/457/726
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