Peter,
Thanks for reporting this issue, it looks like there might be a bug in
tool_list.py, which I will be looking into. In the meantime, you should
still be able to run functional tests for your tool by executing
sh run_functional_tests.sh -id <tool_id>
Where <tool_id> is the ID you have defined in the tool XML. The
functional_tests.py script uses Galaxy's internal tool XML parser to
generate the list of functional tests to run, so it should be able to
find your tool and its tests.
--Dave B.
On 4/11/13 12:36:42.000, Peter Cock wrote:
Hi all,
Does anyone else see this problem with broken tool ids in the
function test script? I found this because one of my own tools
wasn't being recognised because for some reason the id was
treated as _name= [sic].
This happens on the default branch:
$ ./run_functional_tests.sh -list | grep "_name="
_name= RNA/DNA
_name= Convert
_name= Compute quality
statistics
_name= Draw quality score
boxplot
_name= DAVID
$ hg branch
default
hg log -b default | head
changeset: 9349:199b62339f26
user: jeremy goecks <[email protected]>
date: Thu Apr 11 08:44:42 2013 -0400
summary: Whitespace fixes for Vcf datatype.
changeset: 9348:dbfc964167ae
user: guerler
date: Wed Apr 10 17:30:27 2013 -0400
summary: Enhance button for trackster visualization in data display viewer
Have I found a recent regression, or is my system messed up
somehow?
Thanks,
Peter
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