On Apr 16, 2013, at 9:37 AM, Ramon Tiburski wrote:
> I,m getting this error when I try to convert some data, can someone help me?
>
> Traceback (most recent call last):
> File "/home/ramao/galaxy/lib/galaxy/jobs/runners/local.py", line 156, in
> run_job
> job_wrapper.finish( stdout, stderr, exit_code )
> File "/home/ramao/galaxy/lib/galaxy/jobs/__init__.py", line 412, in finish
> dataset.datatype.set_meta( dataset, overwrite = False ) #call
> datatype.set_meta directly for the initial set_meta call during dataset
> creation
> File
> "/home/ramao/shed_tools/web.uniparthenope.it/repos/montella/galaxy_es_core/a8f8a904173c/galaxy_es_core/earthsystem.py",
> line 318, in set_meta
> NetCDF.set_meta(self,dataset)
> File
> "/home/ramao/shed_tools/web.uniparthenope.it/repos/montella/galaxy_es_core/a8f8a904173c/galaxy_es_core/earthsystem.py",
> line 261, in set_meta
> ncml= execAndGetStdout("ncdump -x "+dataset.file_name)
> File
> "/home/ramao/shed_tools/web.uniparthenope.it/repos/montella/galaxy_es_core/a8f8a904173c/galaxy_es_core/earthsystem.py",
> line 48, in execAndGetStdout
> output=local(cmd, capture=True)
> File "/home/ramao/galaxy/eggs/Fabric-1.4.2-py2.7.egg/fabric/operations.py",
> line 1012, in local
> error(message=msg, stdout=out, stderr=err)
> File "/home/ramao/galaxy/eggs/Fabric-1.4.2-py2.7.egg/fabric/utils.py", line
> 305, in error
> return func(message)
> File "/home/ramao/galaxy/eggs/Fabric-1.4.2-py2.7.egg/fabric/utils.py", line
> 26, in abort
> sys.exit(1)
> SystemExit: 1
Hi Ramon,
For a definite answer, you'll want to contact the tool/datatype author.
However, I would guess that the `ncdump` command is failing for some reason,
and that would be the place to look.
--nate
>
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