On Wed, Apr 17, 2013 at 9:24 PM, Björn Grüning wrote:
> Hi Peter,
>
>> On Wed, Apr 17, 2013 at 6:05 PM, James Taylor <ja...@jamestaylor.org> wrote:
>> > No it does not have root, and it is very important that we not install
>> > anything at the system level since we need to maintain version
>> > isolation. We should always be able to inject things into the
>> > environment so that Python/Perl/R look in the right place.
>>
>> So is there any guidance on how that is best done?
>
> I do not now it it is best practise but have a look at
>
> package_numpy_1_7 and
> package_matplotlib_1_2
>
> I will try to setup a few common python deps, so we can include them
> easily in tool_dependecies.xml
>

Thanks - those will be useful. Meanwhile it looks like this thread
is now merging with this more general one about dependencies:
http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-April/014198.html

Regards,

Peter

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