run_reports.sh dies silently.
Its last will in reports_webapp.log states:
Traceback (most recent call last):
File "./scripts/paster.py", line 33, in <module>
serve.run()
File "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py",
line 1056, in run
invoke(command, command_name, options, args[1:])
File "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py",
line 1062, in invoke
exit_code = runner.run(args)
File "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py",
line 227, in run
result = self.command()
File "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py",
line 650, in command
app = loadapp( app_spec, name=app_name, relative_to=base,
global_conf=vars)
File
"/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line
350, in loadapp
return loadobj(APP, uri, name=name, **kw)
File
"/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line
375, in loadobj
return context.create()
File
"/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line
813, in create
return self.object_type.invoke(self)
File
"/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line
249, in invoke
return fix_call(context.object, context.global_conf,
**context.local_conf)
File
"/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line
97, in fix_call
val = callable(*args, **kw)
File
"/home/galaxy/galaxy-dist/lib/galaxy/webapps/reports/buildapp.py", line
61, in app_factory
add_ui_controllers( webapp, app )
File
"/home/galaxy/galaxy-dist/lib/galaxy/webapps/reports/buildapp.py", line
33, in add_ui_controllers
from galaxy.web.base.controller import BaseUIController
File "/home/galaxy/galaxy-dist/lib/galaxy/web/base/controller.py",
line 23, in <module>
from galaxy.visualization.genome.visual_analytics import get_tool_def
File
"/home/galaxy/galaxy-dist/lib/galaxy/visualization/genome/visual_analytics.py",
line 3, in <module>
from galaxy.tools.parameters.basic import IntegerToolParameter,
FloatToolParameter, SelectToolParameter
File "/home/galaxy/galaxy-dist/lib/galaxy/tools/__init__.py", line
57, in <module>
from galaxy.visualization.genome.visual_analytics import
TracksterConfig
ImportError: cannot import name TracksterConfig
Anybody knowing the recipe to reanimate the patient? Thanks.
BTW, this is the first time I am starting up run_reports.sh after the 1
april/8 april update. Did not had this issue before.
Joachim
--
Joachim Jacob
Rijvisschestraat 120, 9052 Zwijnaarde
Tel: +32 9 244.66.34
Bioinformatics Training and Services (BITS)
http://www.bits.vib.be
@bitsatvib
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