try something like the following:
<destination id="20cores_10G" runner="drmaa">
<param id="nativeSpecification">-l h_vmem=10G -pe "*" 20</param>
Hope that helps,
> I recently updated our local galaxy instance first time after a few month.
> Afterwards I noticed that
> the way to setup job runners has changed from single lines to an extra
> I now started to write a job_conf.xml but I don't understand where I put the
> parameters for GridEngine.
> I already read http://wiki.galaxyproject.org/Admin/Config/Jobs but seem to
> have missed this info.
> For example in the old style I have lines like
> velveth = drmaa://-l h_vmem=25G/
> In the new style I would write
> <destination id="cluster" runner="drmaa"/>
> <tool id="velveth" destination="cluster"/>
> But where do I put the "-l h_vmem"?
> regards, Andreas
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