Hi Andreas,

try something like the following:

<destination id="20cores_10G" runner="drmaa">
   <param id="nativeSpecification">-l h_vmem=10G -pe "*" 20</param>

Hope that helps,

> Hi,
> I recently updated our local galaxy instance first time after a few month. 
> Afterwards I noticed that 
> the way to setup job runners has changed from single lines to an extra 
> XML-file.
> I now started to write a job_conf.xml but I don't understand where I put the 
> parameters for GridEngine.
> I already read http://wiki.galaxyproject.org/Admin/Config/Jobs but seem to 
> have missed this info.
> For example in the old style I have lines like
> velveth = drmaa://-l h_vmem=25G/
> In the new style I would write
> "
> ...
> <destinations>
>         <destination id="cluster" runner="drmaa"/>
> </destinations>
> <tools>
>          <tool id="velveth" destination="cluster"/>
> </tools>
> ...
> "
> But where do I put the "-l h_vmem"?
> regards, Andreas

Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

To search Galaxy mailing lists use the unified search at:

Reply via email to