Hi,

I recently updated our local galaxy instance first time after a few month. Afterwards I noticed that the way to setup job runners has changed from single lines to an extra XML-file.
I now started to write a job_conf.xml but I don't understand where I put the 
parameters for GridEngine.

I already read http://wiki.galaxyproject.org/Admin/Config/Jobs but seem to have 
missed this info.
For example in the old style I have lines like

velveth = drmaa://-l h_vmem=25G/


In the new style I would write

"
...
<destinations>
       <destination id="cluster" runner="drmaa"/>
</destinations>
<tools>
        <tool id="velveth" destination="cluster"/>

</tools>
...
"

But where do I put the "-l h_vmem"?

regards, Andreas

--
Andreas Kuntzagk

SystemAdministrator

Berlin Institute for Medical Systems Biology at the
Max-Delbrueck-Center for Molecular Medicine
Robert-Roessle-Str. 10, 13125 Berlin, Germany

http://www.mdc-berlin.de/en/bimsb/BIMSB_groups/Dieterich
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