Hey Christian, This is a bug that surfaced in revision 8333 which should be fixed in 9326:d07c62f0067a, which is available in the most recent galaxy-dist (stable branch). If you'd rather not update right away, we'll have another full-fledged dist release out soon.
-Dannon On Tue, May 21, 2013 at 5:48 AM, Christian Hundsrucker < [email protected]> wrote: > Hello, Galaxy developers! > > I do a bit of tweaking to a local galaxy instance. Thus, I just realized > that subdirectories are not supported for the location of .loc-files/data > tables. > E.g. tool-data/somesub/my.loc is not recognized even if this location is > correctly linked in the tool_data_table_conf.xml (<file > path="tool-data/somesub/my.**loc" />). > Via the Galaxy-Admin interface and 'Server', 'View data tables registry' > the .loc file is marked as a "Missing index file" - in the example the > displayed location would be "tool-data/my.loc" (without the 'somesub' > subdirectory). As soon as I store 'my.loc' directly in the tool-data > directory galaxy runs smoothly again, even (!) if I keep the subdirectory > in the file path in tool_data_table_conf.xml. > > Is galaxy meant to behave like this? If so, a word about it in the > documentation would be really helpful! > > Best, > Christian > > version: > changeset: 8796:961ae35ba612 > branch: stable > tag: tip > parent: 8794:1c7174911392 > user: Nate Coraor <[email protected]> > date: Fri Feb 08 11:23:04 2013 -0500 > > ______________________________**_____________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > > http://galaxyproject.org/**search/mailinglists/<http://galaxyproject.org/search/mailinglists/> >
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