Hey Christian,

This is a bug that surfaced in revision 8333 which should be fixed
in 9326:d07c62f0067a, which is available in the most recent galaxy-dist
(stable branch).  If you'd rather not update right away, we'll have another
full-fledged dist release out soon.

-Dannon


On Tue, May 21, 2013 at 5:48 AM, Christian Hundsrucker <
christian.hundsruc...@ur.de> wrote:

> Hello, Galaxy developers!
>
> I do a bit of tweaking to a local galaxy instance. Thus, I just realized
> that subdirectories are not supported for the location of .loc-files/data
> tables.
> E.g. tool-data/somesub/my.loc is not recognized even if this location is
> correctly linked in the tool_data_table_conf.xml (<file
> path="tool-data/somesub/my.**loc" />).
> Via the Galaxy-Admin interface and 'Server', 'View data tables registry'
> the .loc file is marked as a "Missing index file" - in the example the
> displayed location would be  "tool-data/my.loc" (without the 'somesub'
> subdirectory). As soon as I store 'my.loc' directly in the tool-data
> directory galaxy runs smoothly again, even (!) if I keep the subdirectory
> in the file path in tool_data_table_conf.xml.
>
> Is galaxy meant to behave like this? If so, a word about it in the
> documentation would be really helpful!
>
> Best,
> Christian
>
> version:
> changeset:   8796:961ae35ba612
> branch:      stable
> tag:         tip
> parent:      8794:1c7174911392
> user:        Nate Coraor <n...@bx.psu.edu>
> date:        Fri Feb 08 11:23:04 2013 -0500
>
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