bedtools is not new. It is in already available through the toolshed.
Here are a few relevant links:
Furthermore, the bedtool maintainer offers wrappers from his main
website. The above bedtools are a patched version of his wrappers,
waiting for approval.
> Hi all,
> I want to include a new tool to galaxy. The tool is written in C
> ++. How do I write the xml file to execute a cpp program? The tool
> that I am trying to integrate is
> I have the class file to be executed and the command to execute it.
> For example,
> 'IntersectBed' is my class file. The command to execute it is
> $intersectBed -a reads.bed -b genes.bed (reads.bed and
> genes.bed are input files provided by the user)
> How should I write the <command> tag in the xml file so as to execute
> the above command? Since C++ is complied as opposed to Python which is
> interpreted, I am not sure how to write the <command> tag.
> I am a newbie. I appreciate any guidance offered!
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and other Galaxy lists, please use the interface at:
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