Hello Jens,

It looks like your Galaxy instance is fairly old.  What version of Galaxy are 
you running?

Thanks,

Greg Von Kuster

On May 30, 2013, at 1:49 AM, Keilwagen, Jens wrote:

> Hi Greg,
> 
> here is what the paster.log says:
> 
> 172.31.30.183 - - [30/May/2013:07:39:54 +0200] "GET 
> /admin_toolshed/browse_tool_shed?tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F
>  HTTP/1.0" 302 - "http://galaxy.jki.bund.de/admin_toolshed/browse_tool_sheds"; 
> "Mozilla/5.0 (Windows NT 6.1; WOW64; rv:21.0) Gecko/20100101 Firefox/21.0"
> 172.31.30.183 - - [30/May/2013:07:40:17 +0200] "GET 
> /admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=1d92ebdf7e8d466c&changeset_revisions=9dabbfd73c8a
>  HTTP/1.0" 500 - 
> "http://toolshed.g2.bx.psu.edu/repository/preview_tools_in_changeset?repository_id=1d92ebdf7e8d466c&changeset_revision=9dabbfd73c8a";
>  "Mozilla/5.0 (Windows NT 6.1; WOW64; rv:21.0) Gecko/20100101 Firefox/21.0"
> Error - <type 'exceptions.ValueError'>: too many values to unpack
> URL: 
> http://galaxy.jki.bund.de/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=1d92ebdf7e8d466c&changeset_revisions=9dabbfd73c8a
> File '/opt/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/error.py', 
> line 149 in __call__
>  app_iter = self.application(environ, sr_checker)
> File 
> '/opt/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.6.egg/paste/recursive.py', 
> line 84 in __call__
>  return self.application(environ, start_response)
> File 
> '/opt/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.6.egg/paste/httpexceptions.py',
>  line 633 in __call__
>  return self.application(environ, start_response)
> File '/opt/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 128 in 
> __call__
>  return self.handle_request( environ, start_response )
> File '/opt/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 184 in 
> handle_request
>  body = method( trans, **kwargs )
> File '/opt/galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 231 
> in decorator
>  return func( self, trans, *args, **kwargs )
> File 
> '/opt/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py',
>  line 894 in prepare_for_install
>  common_install_util.get_dependencies_for_repository( trans, tool_shed_url, 
> repo_info_dict, includes_tool_dependencies )
> File '/opt/galaxy/galaxy-dist/lib/tool_shed/util/common_install_util.py', 
> line 88 in get_dependencies_for_repository
>  installed_rd, missing_rd = 
> get_installed_and_missing_repository_dependencies_for_new_install( trans, 
> repo_info_tuple )
> File '/opt/galaxy/galaxy-dist/lib/tool_shed/util/common_install_util.py', 
> line 192 in get_installed_and_missing_repository_dependencies_for_new_install
>  tool_shed, name, owner, changeset_revision = rd_tup
> ValueError: too many values to unpack
> 
> 
> CGI Variables
> -------------
>  CONTENT_LENGTH: '0'
>  HTTP_ACCEPT: 
> 'text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8'
>  HTTP_ACCEPT_ENCODING: 'gzip, deflate'
>  HTTP_ACCEPT_LANGUAGE: 'de-de,de;q=0.8,en-us;q=0.5,en;q=0.3'
>  HTTP_CACHE_CONTROL: 'max-age=0'
>  HTTP_CONNECTION: 'keep-alive'
>  HTTP_COOKIE: 
> 'galaxysession=c6ca0ddb55be603a88fa41dbba7680819dc3ac10c92a6efa6da917af7060700e4360e4afb5987baa'
>  HTTP_HOST: 'galaxy.jki.bund.de'
>  HTTP_REFERER: 
> 'http://toolshed.g2.bx.psu.edu/repository/preview_tools_in_changeset?repository_id=1d92ebdf7e8d466c&changeset_revision=9dabbfd73c8a'
>  HTTP_USER_AGENT: 'Mozilla/5.0 (Windows NT 6.1; WOW64; rv:21.0) 
> Gecko/20100101 Firefox/21.0'
>  HTTP_VIA: '1.1 proxy.jki.bund.de:8000 (squid/2.7.STABLE9)'
>  HTTP_X_FORWARDED_FOR: '172.31.30.183'
>  ORGINAL_REMOTE_ADDR: '172.16.20.52'
>  PATH_INFO: '/admin_toolshed/prepare_for_install'
>  QUERY_STRING: 
> 'tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=1d92ebdf7e8d466c&changeset_revisions=9dabbfd73c8a'
>  REMOTE_ADDR: '172.31.30.183'
>  REQUEST_METHOD: 'GET'
>  SERVER_NAME: '0.0.0.0'
>  SERVER_PORT: '8080'
>  SERVER_PROTOCOL: 'HTTP/1.0'
> 
> 
> WSGI Variables
> --------------
>  application: <paste.recursive.RecursiveMiddleware object at 0x8781210>
>  paste.cookies: (<SimpleCookie: 
> galaxysession='c6ca0ddb55be603a88fa41dbba7680819dc3ac10c92a6efa6da917af7060700e4360e4afb5987baa'>,
>  
> 'galaxysession=c6ca0ddb55be603a88fa41dbba7680819dc3ac10c92a6efa6da917af7060700e4360e4afb5987baa')
>  paste.expected_exceptions: [<class 'paste.httpexceptions.HTTPException'>]
>  paste.httpexceptions: <paste.httpexceptions.HTTPExceptionHandler object at 
> 0x8851bd0>
>  paste.httpserver.thread_pool: <paste.httpserver.ThreadPool object at 
> 0x87b2450>
>  paste.parsed_querystring: ([('tool_shed_url', 
> 'http://toolshed.g2.bx.psu.edu/'), ('repository_ids', '1d92ebdf7e8d466c'), 
> ('changeset_revisions', '9dabbfd73c8a')], 
> 'tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=1d92ebdf7e8d466c&changeset_revisions=9dabbfd73c8a')
>  paste.recursive.forward: <paste.recursive.Forwarder from />
>  paste.recursive.include: <paste.recursive.Includer from />
>  paste.recursive.include_app_iter: <paste.recursive.IncluderAppIter from />
>  paste.recursive.script_name: ''
>  paste.throw_errors: True
>  request_id: '6905bf7ac8eb11e297ec0050568d0b1f'
>  webob._parsed_query_vars: (MultiDict([('tool_shed_url', 
> 'http://toolshed.g2.bx.psu.edu/'), ('repository_ids', '1d92ebdf7e8d466c'), 
> ('changeset_revisions', '9dabbfd73c8a')]), 
> 'tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=1d92ebdf7e8d466c&changeset_revisions=9dabbfd73c8a')
>  wsgi process: 'Multithreaded'
> ------------------------------------------------------------
> 
> However, installing other tools from the tool shed was no problem so far.
> 
> Best regards, Jens
> 
>> -----Urspr√ľngliche Nachricht-----
>> Von: Greg Von Kuster [mailto:g...@bx.psu.edu]
>> Gesendet: Mittwoch, 29. Mai 2013 16:45
>> An: Keilwagen, Jens
>> Cc: Galaxy Dev
>> Betreff: Re: [galaxy-dev] Internal Server Error during installation of
>> ncbi_blast_plus
>> 
>> Hello Jens,
>> 
>> What does your Galaxy paster log show that is related to the internal
>> server error?
>> 
>> Greg Von Kuster
>> 
>> On May 29, 2013, at 10:13 AM, Peter Cock wrote:
>> 
>>> On Wed, May 29, 2013 at 8:33 AM, Keilwagen, Jens
>>> <jens.keilwa...@jki.bund.de> wrote:
>>>> Hi guys,
>>>> 
>>>> we are currently estalishing our own local Galaxy instance. However,
>>>> when we try to install "Repository 'ncbi_blast_plus'" from the
>> Galaxy
>>>> main tool shed via the admin pages, we obtain the following error
>>>> 
>>>> "Internal Server Error
>>>> Galaxy was unable to sucessfully complete your request
>>>> 
>>>> An error occurred.
>>>> This may be an intermittent problem due to load or other
>>>> unpredictable factors, reloading the page may address the problem.
>>>> 
>>>> The error has been logged to our team."
>>>> 
>>>> We tried to install on three different days. Hence, we believe there
>> might be another problem.
>>>> 
>>>> Thanks for any help.
>>>> 
>>>> Best regards, Jens
>>> 
>>> Hi Jens,
>>> 
>>> The Galaxy team should be able to ask some more targeted questions,
>>> but how far did the process get? Were you asked about the
>> dependencies
>>> (e.g. the blast_dataypes repository or the underlying BLAST+
>> binaries)?
>>> 
>>> Peter
>>> 
>>> P.S. What kind of system are you using? 64 bit Linux? Mac OS X?
>>> ___________________________________________________________
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> 
> 


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