I guess I now realize why there is so much traffic on the user list about
tools, and I also can guess that while the online directions for dealing
with them are written well for those individuals familiar with
administration a server or doing full time bioinformatics, but there are
some of us computer numbskulls that need something like a Galaxy transfer
booklet for computer idiots (biologists) to transfer what we want into a
single user or single lab setup.
I am hoping there is someone out there like myself who worked through the
problem of transferring the Trapnell et al series of programs into a Mac
Pro desktop, namely
NGS: RNA Analysis
1) Tophat for Illumina
tophat (1.3.3-1.4.0) with bowtie + bowtie indexes
I have transferred the galaxy framework in a work/galaxy-dist pathway
unto a solid state drive of a 64gb ram mac that has 3 other 2tb drives and
have gotten some valuable advice for transferring large datasets from the
same computer via admin. For the next year at least my needs with be just
the RNA analysis tools above.
Any help will be greatly appreciated.
My intention here is remove my contribution to the traffic on the online
Galaxy, so some people should consider it a worthy cause
Professor of Molecular Genetics and Microbiology
Duke University Medical Cener
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