Hello again,
I guess I now realize why there is so much traffic on the user list about
tools, and I also can guess that while the online directions for dealing
with them are written well for those individuals familiar with
administration a  server or doing full time bioinformatics, but there are
some of us computer numbskulls  that need something like a Galaxy transfer
booklet for computer idiots (biologists) to transfer what we want into a
single user or single lab setup.
I am hoping there is someone out there like myself who worked through the
problem of transferring the Trapnell et al series of programs into a Mac
Pro desktop, namely
NGS: RNA Analysis
1)  Tophat for Illumina
tophat (1.3.3-1.4.0) with bowtie + bowtie indexes
2)  Cufflinks
cufflinks (1.3.0-2.1.1)
3)  Cuffcompare
cufflinks (1.3.0-2.1.1)
4)  Cuffmerge
cuffmerge (1.3.0-2.1.1)
5)  Cuffdiff
cuffdiff (2.1.0-2.1.1)
I have transferred the galaxy framework in a work/galaxy-dist   pathway
unto a solid state drive of a 64gb ram mac that has 3 other 2tb drives and
have gotten some valuable advice for transferring large datasets from the
same computer via admin.  For the next year at least my needs with be just
the RNA analysis tools above.
Any help will be greatly appreciated.
My intention here is remove my contribution to the traffic on the online
Galaxy, so some people should consider it a worthy cause

Elwood Linney
Professor of Molecular Genetics and Microbiology
Duke University Medical Cener
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

To search Galaxy mailing lists use the unified search at:

Reply via email to