Hi Björn,
Thanks Björn for the reply ,
But pdb file format is working not working auto option ..it works with by
selecting PDB file format option in galaxy ...
do i have to modify any registry.py file or any other file ? i have included
only init ,init_meta and sniff function in PDB ( txt ) in data.py file ..
Regards
shahsi
________________________________
From: Björn Grüning <bjoern.gruen...@pharmazie.uni-freiburg.de>
To: shashi shekhar <me_shash...@yahoo.co.in>
Cc: Peter Cock <p.j.a.c...@googlemail.com>; Galaxy Dev <galaxy-...@bx.psu.edu>
Sent: Tuesday, 25 June 2013 3:40 PM
Subject: Re: [galaxy-dev] How to enable auto option for newly added file formats
Hi Shashi,
can you try my molecule datatype repository?
http://testtoolshed.g2.bx.psu.edu/view/bgruening/chemical_datatypes
The source is here:
https://github.com/bgruening/galaxytools/blob/master/chemicaltoolbox/datatypes/molecules.py
I have also a PDB definition inluded maybe that works for you and we can
join the effort.
Thanks,
Bjoern
> Hi,
> yeah i followd this tutorial ..
> http://wiki.galaxyproject.org/Admin/Datatypes/Adding%20Datatypes
>
> yeah ,i have tested my sniff methods .it works fine .when i upload
> any pdb file by using the option file format (PDB ) , it works but
> with auto option it doesnot work ........
> regards
> shashi
>
>
>
> ______________________________________________________________________
> From: Peter Cock <p.j.a.c...@googlemail.com>
> To: shashi shekhar <me_shash...@yahoo.co.in>
> Cc: Galaxy Dev <galaxy-...@bx.psu.edu>
> Sent: Tuesday, 25 June 2013 1:14 PM
> Subject: Re: [galaxy-dev] How to enable auto option for newly added
> file formats
>
>
> On Tue, Jun 25, 2013 at 8:28 AM, shashi shekhar
> <me_shash...@yahoo.co.in> wrote:
> > Hi,
> >
> > yeah ..it is same thing... but i followed the galaxy -datatype(how
> to add
> > new file format)tutorial ..but still my newly added file format is
> not
> > working with auto option ....it always display txt format ..it is
> similar to
> > txt format with some specific property ..
> >
> > Reagrds
> > shashi
>
> So you've followed this:
> http://wiki.galaxyproject.org/Admin/Datatypes/Adding%20Datatypes
>
> Have you tested your sniff method works? Have you checked the
> order the file types are tested?
>
> Peter
>
> P.S. Don't forget to CC the mailing list.
>
>
>
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