I submitted a workflow that in turn submits a drm job to sun grid engine.
The queue had an error (probably due to a problem with automount).
Traceback (most recent call last):
File "/inside/depot4/galaxy/lib/galaxy/jobs/runners/__init__.py", line 60, in
run_next
method(arg)
File "/inside/depot4/galaxy/lib/galaxy/jobs/runners/drmaa.py", line 169, in
queue_job
external_job_id = self.ds.runJob(jt)
File "/inside/depot4/galaxy/eggs/drmaa-0.4b3-py2.7.egg/drmaa/__init__.py",
line 331, in runJob
_h.c(_w.drmaa_run_job, jid, _ct.sizeof(jid), jobTemplate)
File "/inside/depot4/galaxy/eggs/drmaa-0.4b3-py2.7.egg/drmaa/helpers.py",
line 213, in c
return f(*(args + (error_buffer, sizeof(error_buffer))))
File "/inside/depot4/galaxy/eggs/drmaa-0.4b3-py2.7.egg/drmaa/errors.py", line
90, in error_check
raise _ERRORS[code-1]("code %s: %s" % (code, error_buffer.value))
DeniedByDrmException: code 17: error: no suitable queues
When the sysadmin cleared the error, the job started running normally after
being in an error state for 10 minutes.
The cool thing is that galaxy kept running without a problem.
galaxy.jobs.runners.drmaa DEBUG 2013-06-27 14:51:22,968 (10481/4767487) state
change: job is running
galaxy.jobs.runners.drmaa DEBUG 2013-06-27 15:00:23,628 (10481/4767487) state
change: job is queued and active
galaxy.jobs.runners.drmaa DEBUG 2013-06-27 15:00:27,751 (10481/4767487) state
change: job is running
However in the history panel, the job shows as queued but not running, even if
I refresh the history panel.
Is this normal or should the status change to running?
I'm using this version of straight galaxy:
changeset: 10162:f295092476c7
branch: stable
parent: 10160:2efb1083676b
user: Dannon Baker <dannonba...@me.com>
date: Sat Jun 15 09:08:09 2013 -0400
summary: Fix reports import issue reported by Lance,
https://trello.com/card/bug-in-reports-webapp-imports/506338ce32ae458f6d15e4b3/943
-Robert Baertsch
UC Santa Cruz
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