Nevermind, it's not important. All of my data was test data, and the migration was seemless to postgresql. I'll just re-register the users and re-import the fastq files.
On Wed, Jul 3, 2013 at 5:40 PM, Lee Katz <lsk...@gmail.com> wrote: > Hi, I am realizing, hopefully not to late, that I need to convert my > database to postgresql so that I can have concurrent sessions and all the > other goodness that it brings to the table. Is there an easy way to > convert? I am trying to do it on the command line, but it isn't working so > well. I am kind of new to postgres and even sqlite > > I tried this dump/import command, but it does not work. It didn't seem to > like "PRAGMA" so I removed it > (sqlite3 universe.sqlite .dump|grep -v 'PRAGMA'|psql chapman galaxy) > 2>&1|less > > BEGIN > NOTICE: CREATE TABLE / PRIMARY KEY will create implicit index > "migrate_version_pkey" for table "migrate_version" > CREATE TABLE > INSERT 0 1 > NOTICE: CREATE TABLE / PRIMARY KEY will create implicit index > "dataset_pkey" for table "dataset" > CREATE TABLE > ERROR: column "deleted" is of type boolean but expression is of type > integer > LINE 1: ...5:50:25.714594','2013-06-28 15:51:00.760008','ok',0,0,0,'/me... > ^ > HINT: You will need to rewrite or cast the expression. > ERROR: current transaction is aborted, commands ignored until end of > transaction block > ERROR: current transaction is aborted, commands ignored until end of > transaction block > ERROR: current transaction is aborted, commands ignored until end of > transaction block > > > -- Lee Katz, Ph.D.
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