liftOver files come from the UCSC genome browser, derived from pairwise alignments.
A variety of tools can create nib files from fasta, however we prefer the use of the twoBit format now, which can be created using faToTwoBit from the UCSC utilities. -- James Taylor, Assistant Professor, Biology/CS, Emory University On Sat, Jul 6, 2013 at 9:19 PM, Perez, Ricardo <ricky_...@neo.tamu.edu> wrote: > Dear all, > > When I rsync files from let say the following command: > rsync -avzP rsync://datacache.g2.bx.psu.edu/indexes/dm3 . > > The system will sync files that are related to genome aligments, liftover, > and nibs. > How did the Galaxy team generated this files? > The reason I ask is because I would lather will like to generate similar > files to custom genomes to be used in galaxy. > > Thank you for your time, > --Ricardo Perez > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
