Ben,
In the specific case of the RSEM repository, the tool shed code has
determined that the rsem-1.1.17.xml tool definition file will not load
correctly into Galaxy, and for that reason the repository is not
considered to be installable. The 'Search and browse tool sheds' feature
on the Galaxy side filters the list of repositories to those that are
determined to be installable.
For more details, see the wiki page for the tool shed at:
http://wiki.galaxyproject.org/RepositoryRevisions#What_does_it_mean_when_repository_metadata_is_associated_with_a_change_set_in_the_repository_change_log.3F
--Dave B.
On 8/16/13 07:25:33.000, Benjamin Schuster-Boeckler wrote:
Yesterday, I noticed that there are some packages in http://toolshed.g2.bx.psu.edu that I can't find when I
search the main tool shed on my local instance. I would have thought that the "Search and browse tool
sheds" options under "Admin" is just a front-end for the search on the main tool shed on the
web, so I was surprised to find differences. How can I install e.g. the RSEM package
(http://toolshed.g2.bx.psu.edu/view/victor/rsem) on my local instance then? Is there a way to
"pull" from the main tool shed so that I see the same data locally that's on the web?
Thanks in advance,
Ben
--
Benjamin Schuster-Böckler
Leadership Fellow for Bioinformatics
☎ +44 1865 617481
✉ [email protected]
Ludwig Institute for Cancer Research
University of Oxford
Old Road Campus Research Building
Oxford OX3 7DQ
United Kingdom
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