On Thu, Aug 22, 2013 at 4:14 PM, Ketan Maheshwari
<ketancmaheshw...@gmail.com> wrote:
> Hi All,
> I am trying to develop a generic Galaxy tool which could encapsulate any
> other Galaxy tool and run it. The motivation behind this development is to
> enable running ordinary Galaxy tools in parallel with multiple datasets
> and/or running ordinary tools on large-scale compute resources.
> I was wondering about the Galaxy-way of doing this. Is there a natural
> pattern I could adapt here for this work? Are there any existing examples
> which does this?

Hi Ketan.

This is a little broader than your initial question,

There has been a lot of work done already on running Galaxy on
multiple datasets at once - some of which is already built into
Galaxy, while other like John Chilton's multiple-file support is only
available as an experimental branch, e.g.


Galaxy also has the capability to split large jobs into many parts
to take advantage of a cluster - I use this in the BLAST+ wrapper
to break up searches into batches of 1000 queries for example.
This isn't enabled by default, but we're using in on our instance.


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