Hi John,

Some news on the debugging yet?

I managed to deploy blend4j in my local maven installation, so now I
can test the client.setChunkedEncodingSize(CHUNKED_ENCODING_SIZE);
line on my setting.

Unfortunately with ChunkedEncoding enabled, it seems that the file is
not (recognized by || sent to) galaxy.

this is the errormessage:

galaxy.web.framework ERROR 2013-09-10 16:06:15,688 Uncaught exception
in exposed API method:
Traceback (most recent call last):
  File "/opt/galaxy_testing/lib/galaxy/web/framework/__init__.py",
line 189, in decorator
    rval = func( self, trans, *args, **kwargs)
TypeError: create() takes exactly 3 arguments (2 given)
10.79.24.114 - - [10/Sep/2013:16:06:15 +0200] "POST
/galaxy_testing/api/tools?key=1234567890abcdef1234567890abcdef1
HTTP/1.1" 500 - "-" "Java/1.7.0_25"

Do you know this problem, or could there also be something wrong with my config?

Thanks for the fast reply!

On 9 September 2013 19:51, John Chilton <chil...@msi.umn.edu> wrote:
> Glad to hear blend4j is working well, annoyed to here it is not
> streaming files out by default.
>
> Based on your ideas I started some work here, but it is not right. I
> spent the last half an hour looking around Galaxy trying to figure out
> why history creation via the API was broken, not realizing it was
> because I called setChunkedEncodingSize on the client.
>
> https://github.com/jmchilton/blend4j/commit/22608de210f805fc192c86a836ea55c7ae1efccf
>
> I have created an issue in github for this:
>
> https://github.com/jmchilton/blend4j/issues/5
>
> Feel free to try to hack on this some more, it might actually take
> some non-trivial refactoring to get
> client.setChunkedEncodingSize(CHUNKED_ENCODING_SIZE); to be set
> conditionally somehow. Right now all requests are sharing the same
> underlying client object.
>
> I will try to work on this more as I have time.
>
> -John
>
> On Mon, Sep 9, 2013 at 10:58 AM, Eric Kuyt <eric.ku...@wur.nl> wrote:
>> Hi all,
>>
>> I'm using blend4j for some time now and I'm quite happy about it, but
>> now I run into some OutOfMemory issues.
>> When I try to upload large files to galaxy (I know http might be not
>> the best option) some byte array is getting to large. A possible
>> solution would be file chunking in jersey, is this possible in blend4j
>> and how could I implement this feature?
>>
>> Thanks,
>>
>> Eric
>>
>
>



-- 
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Department of Infection Biology
PO box 65, 8200 AB Lelystad, NL
Visiting address: ASG, Edelhertweg 15, 8219 PH Lelystad

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