Hello,
I thought it might be a problem related to authentication and decided to
run it in a brand new install on my desktop.
Same problem: HTTP Error 500
Could you please verify this?
Thanks,
Adhemar
Error Traceback:
View as: Interactive
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>
|
Text
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>
|
XML
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>(full)
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>
⇝|HTTPError: HTTP Error 500: Internal Server Error|
URL:
http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282
Module weberror.evalexception.middleware:*364* in
|respond|<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>view
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>
|>>
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>||app_iter||||*=*||||self||*.*||application||*(*||environ||*,*||||detect_start_response||*)*|
Module paste.recursive:*84* in
|__call__|<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>view
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>
|>>
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>||*return*||||self||*.*||application||*(*||environ||*,*||||start_response||*)*|
Module paste.httpexceptions:*633* in
|__call__|<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>view
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>
|>>
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>||*return*||||self||*.*||application||*(*||environ||*,*||||start_response||*)*|
Module galaxy.web.framework.base:*132* in
|__call__|<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>view
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>
|>>
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>||*return*||||self||*.*||handle_request||*(*||||environ||*,*||||start_response||||*)*|
Module galaxy.web.framework.base:*190* in
|handle_request|<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>view
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>
|>>
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>||body||||*=*||||method||*(*||||trans||*,*||||****||kwargs||||*)*|
Module galaxy.web.framework:*221* in
|decorator|<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>view
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>
|>>
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>||*return*||||func||*(*||||self||*,*||||trans||*,*||||***||args||*,*||||****||kwargs||||*)*|
Module galaxy.webapps.galaxy.controllers.admin_toolshed:*908* in
|prepare_for_install|<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>view
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>
|>>
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>||includes_tool_dependencies||||*)*|
Module tool_shed.util.common_install_util:*130* in
|get_dependencies_for_repository|<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>view
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>
|>>
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>||all_repo_info_dict||||*=*||||get_required_repo_info_dicts||*(*||||trans||*,*||||tool_shed_url||*,*||||util||*.*||listify||*(*||repo_info_dict||||*)*||||*)*|
Module tool_shed.util.common_install_util:*360* in
|get_required_repo_info_dicts|<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>view
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>
|>>
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>||response||||*=*||||urllib2||*.*||urlopen||*(*||||request||||*).*||read||*()*|
Module urllib2:*127* in
|urlopen|<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>view
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>
|>>
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>||*return*||||_opener||*.*||open||*(*||url||*,*||||data||*,*||||timeout||*)*|
Module urllib2:*410* in
|open|<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>view
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>
|>>
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>||response||||*=*||||meth||*(*||req||*,*||||response||*)*|
Module urllib2:*523* in
|http_response|<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>view
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>
|>>
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>||'http'||*,*||||request||*,*||||response||*,*||||code||*,*||||msg||*,*||||hdrs||*)*|
Module urllib2:*448* in
|error|<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>view
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>
|>>
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>||*return*||||self||*.*||_call_chain||*(**||args||*)*|
Module urllib2:*382* in
|_call_chain|<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>view
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>
|>>
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>||result||||*=*||||func||*(**||args||*)*|
Module urllib2:*531* in
|http_error_default|<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#><http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>view
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>
|>>
<http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282#>||*raise*||||HTTPError||*(*||req||*.*||get_full_url||*(),*||||code||*,*||||msg||*,*||||hdrs||*,*||||fp||*)*|
*HTTPError: HTTP Error 500: Internal Server Error*
2013/9/10 Adhemar <azn...@gmail.com <mailto:azn...@gmail.com>>
Hi,
I've just updated my galaxy-central version and I can't use the tool
shed installer via admin user any more. When I click 'Install to
Galaxy' it throws and 500 error.
Could you please verify that? I tried the URL from tool_shed_url in
the browser and it also doesn't open.
Thanks,
Adhemar
10.129.9.38, 10.129.0.1 - - [10/Sep/2013:16:05:59 -0200] "GET
/galaxy/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282
HTTP/1.0" 500 -
"http://toolshed.g2.bx.psu.edu/repository/preview_tools_in_changeset?repository_id=c45d6c51a4fcfc6c&changeset_revision=bf1c3f9f8282";
"Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like
Gecko) Chrome/28.0.1500.95 Safari/537.36"
Error - <class 'urllib2.HTTPError'>: HTTP Error 500: Internal Server
Error
URL:
https://www.lmb.cnptia.embrapa.br/galaxy/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282
File
'/opt/bioinformatics/share/galaxy20130410/lib/galaxy/web/framework/middleware/error.py',
line 149 in __call__
app_iter = self.application(environ, sr_checker)
File '/usr/lib/python2.6/site-packages/paste/recursive.py', line 80
in __call__
return self.application(environ, start_response)
File
'/opt/bioinformatics/share/galaxy20130410/lib/galaxy/web/framework/middleware/remoteuser.py',
line 91 in __call__
return self.app( environ, start_response )
File '/usr/lib/python2.6/site-packages/paste/httpexceptions.py',
line 633 in __call__
return self.application(environ, start_response)
File
'/opt/bioinformatics/share/galaxy20130410/lib/galaxy/web/framework/base.py',
line 132 in __call__
return self.handle_request( environ, start_response )
File
'/opt/bioinformatics/share/galaxy20130410/lib/galaxy/web/framework/base.py',
line 190 in handle_request
body = method( trans, **kwargs )
File
'/opt/bioinformatics/share/galaxy20130410/lib/galaxy/web/framework/__init__.py',
line 221 in decorator
return func( self, trans, *args, **kwargs )
File
'/opt/bioinformatics/share/galaxy20130410/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py',
line 908 in prepare_for_install
includes_tool_dependencies )
File
'/opt/bioinformatics/share/galaxy20130410/lib/tool_shed/util/common_install_util.py',
line 130 in get_dependencies_for_repository
all_repo_info_dict = get_required_repo_info_dicts( trans,
tool_shed_url, util.listify( repo_info_dict ) )
File
'/opt/bioinformatics/share/galaxy20130410/lib/tool_shed/util/common_install_util.py',
line 360 in get_required_repo_info_dicts
response = urllib2.urlopen( request ).read()
File '/usr/lib64/python2.6/urllib2.py', line 126 in urlopen
return _opener.open(url, data, timeout)
File '/usr/lib64/python2.6/urllib2.py', line 397 in open
response = meth(req, response)
File '/usr/lib64/python2.6/urllib2.py', line 510 in http_response
'http', request, response, code, msg, hdrs)
File '/usr/lib64/python2.6/urllib2.py', line 435 in error
return self._call_chain(*args)
File '/usr/lib64/python2.6/urllib2.py', line 369 in _call_chain
result = func(*args)
File '/usr/lib64/python2.6/urllib2.py', line 518 in http_error_default
raise HTTPError(req.get_full_url(), code, msg, hdrs, fp)
HTTPError: HTTP Error 500: Internal Server Error
CGI Variables
-------------
CONTENT_LENGTH: '0'
HTTP_ACCEPT:
'text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8'
HTTP_ACCEPT_ENCODING: 'gzip,deflate,sdch'
HTTP_ACCEPT_LANGUAGE: 'pt-BR,pt;q=0.8,en-US;q=0.6,en;q=0.4'
HTTP_AUTHORIZATION: 'Basic YWRoZW1hcjpDYWxsIG1lIHRoZSBicmVlemUh'
HTTP_COOKIE:
'galaxysession=c6ca0ddb55be603a7b1853fca2041c148b00044fe9cfda0f39abd5fcb4fe71a0bc3b556f2ab9d86b;
GUEST_LANGUAGE_ID=pt_BR; COOKIE_SUPPORT=true;
JSESSIONID=EC393E44F6CC64AB7CECE0B38408E133'
HTTP_HOST: 'www.lmb.cnptia.embrapa.br
<http://www.lmb.cnptia.embrapa.br>'
HTTP_REFERER:
'http://toolshed.g2.bx.psu.edu/repository/preview_tools_in_changeset?repository_id=c45d6c51a4fcfc6c&changeset_revision=bf1c3f9f8282'
HTTP_REMOTE_USER: 'adhemar@'
HTTP_USER_AGENT: 'Mozilla/5.0 (X11; Linux x86_64)
AppleWebKit/537.36 (KHTML, like Gecko) Chrome/28.0.1500.95
Safari/537.36'
HTTP_X_URL_SCHEME: 'https'
PATH_INFO: '/admin_toolshed/prepare_for_install'
QUERY_STRING:
'tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282'
REMOTE_ADDR: '10.129.9.38, 10.129.0.1'
REQUEST_METHOD: 'GET'
SCRIPT_NAME: '/galaxy'
SERVER_NAME: 'www.lmb.cnptia.embrapa.br
<http://www.lmb.cnptia.embrapa.br>'
SERVER_PORT: '8080'
SERVER_PROTOCOL: 'HTTP/1.0'
WSGI Variables
--------------
application: <paste.recursive.RecursiveMiddleware object at
0x8c58d90>
is_api_request: False
original_wsgi.url_scheme: 'http'
paste.cookies: (<SimpleCookie: COOKIE_SUPPORT='true'
GUEST_LANGUAGE_ID='pt_BR'
JSESSIONID='EC393E44F6CC64AB7CECE0B38408E133'
galaxysession='c6ca0ddb55be603a7b1853fca2041c148b00044fe9cfda0f39abd5fcb4fe71a0bc3b556f2ab9d86b'>,
'galaxysession=c6ca0ddb55be603a7b1853fca2041c148b00044fe9cfda0f39abd5fcb4fe71a0bc3b556f2ab9d86b;
GUEST_LANGUAGE_ID=pt_BR; COOKIE_SUPPORT=true;
JSESSIONID=EC393E44F6CC64AB7CECE0B38408E133')
paste.expected_exceptions: [<class
'paste.httpexceptions.HTTPException'>]
paste.httpexceptions: <paste.httpexceptions.HTTPExceptionHandler
object at 0x8c58610>
paste.httpserver.thread_pool: <paste.httpserver.ThreadPool object
at 0x22bca10>
paste.parsed_querystring: ([('tool_shed_url',
'http://toolshed.g2.bx.psu.edu/'), ('repository_ids',
'c45d6c51a4fcfc6c'), ('changeset_revisions', 'bf1c3f9f8282')],
'tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282')
paste.recursive.forward: <paste.recursive.Forwarder from /galaxy>
paste.recursive.include: <paste.recursive.Includer from /galaxy>
paste.recursive.include_app_iter:
<paste.recursive.IncluderAppIter from /galaxy>
paste.recursive.script_name: '/galaxy'
paste.throw_errors: True
request_id: '0743e52a1a4c11e39742e41f13e30314'
webob._parsed_query_vars: (MultiDict([('tool_shed_url',
'http://toolshed.g2.bx.psu.edu/'), ('repository_ids',
'c45d6c51a4fcfc6c'), ('changeset_revisions', 'bf1c3f9f8282')]),
'tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282')
wsgi process: 'Multithreaded'
------------------------------------------------------------
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