Hi Greg and Rico,

> 
> 
> atlas 
> 3.10.1
> package
> Error
> cat: ..//CONFIG/src/Makefile: No such file or directory cp: 
> ..//CONFIG/src/atlcomp.txt: No such file or directory make: *** No rule to 
> make target `xconfig'. Stop. /bin/sh: line 1: ./xconfig: No such file or 
> directory

Hopefully fixed in newest release. I just will try so long until all
OS-X installations work :)

> 
> lapack 
> 3.4.2
> package
> Error
> CMake Error:
> your Fortran
> compiler:
> "CMAKE_Fortran_COMPILER-NOTFOUND" was not found. Please set 
> CMAKE_Fortran_COMPILER to a valid compiler path or name. CMake Error at 
> /opt/local/share/cmake-2.8/Modules/CMakeFortranInformation.cmake:27 
> (get_filename_component): get_filename_component called with incorrect number 
> of arguments Call Stack (most recent call first): CMakeLists.txt:2 (project) 
> CMake Error: CMAKE_Fortran_COMPILER not set, after 

fortran needs to be installed. I think we agreed that we can assume
that? We really need to write that down somewhere ...


> 
> phast 
> 1.3
> package
> Error
> make[1]: ***
> No rule to
> make target
> `/Users/gvk/workspace/tool_dependencies/clapack/3.2.1/rico/package_clapack_3_2_1/56a949e5f998/lapack.a',
>  needed by 
> `/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/lib/../../lib/liblapack.a'.
>  Stop. make[1]: *** No rule to make target 
> `/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/dless/../../lib/libphast.a',
>  needed by 
> `/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/dless/../../bin/dless'.
>  Stop. make[1]: *** No rule to make target 
> `/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/exoniphy/../../lib/libphast.a',
>  needed by 
> `/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/exoniphy/../../bin/exoniphy'.
>  Stop. make[1]: *** No rule to make target 
> `/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/phastCons/../../lib/libphast.a',
>  needed by `/Users/gvk/worksp!
 
ace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/phastCons/../../bin/phastCons'.
 Stop. make[1]: *** No rule to make target 
`/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/phastOdds/../../lib/libphast.a',
 needed by 
`/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/phastOdds/../../bin/phastOdds'.
 Stop. make[1]: *** No rule to make target 
`/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/phastMotif/../../lib/libphast.a',
 needed by 
`/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/phastMotif/../../bin/phastMotif'.
 Stop. make[1]: *** No rule to make target 
`/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/phyloFit/../../lib/libphast.a',
 needed by 
`/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/phyloFit/../../bin/phyloFit'.
 Stop. make[1]:!
  *** No rule to make target `/Users/gvk/workspace/galaxy-centr!
 al/datab
ase/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/phyloBoot/../../lib/libphast.a', 
needed by 
`/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/phyloBoot/../../bin/phyloBoot'.
 Stop. make[1]: *** No rule to make target 
`/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/phyloP/../../lib/libphast.a',
 needed by 
`/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/phyloP/../../bin/phyloP'.
 Stop. make[1]: *** No rule to make target 
`/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/prequel/../../lib/libphast.a',
 needed by 
`/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/prequel/../../bin/pbsDecode'.
 Stop. make[1]: *** No rule to make target 
`/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/util/../../lib/libphast.a',
 needed by `/Users/gvk/workspace/galaxy-central/database/!
 tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/util/../../bin/all_dists'. Stop. 
make: *** [all] Error 2
> 


On ubuntu its installing fine for me.

Have a nice weekend!
Bjoern




> > 
> > '/scratch/galaxy/home/oocyte/galaxy_oocyte/lib/galaxy/web/framework/__init__.py',
> >  line 221 in decorator
> >  return func( self, trans, *args, **kwargs )
> > File'/scratch/galaxy/home/oocyte/galaxy_oocyte/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py',
> >  line 911 in prepare_for_install
> >  includes_tool_dependencies )
> > File
> > '/scratch/galaxy/home/oocyte/galaxy_oocyte/lib/tool_shed/util/common_install_util.py',
> >  line 85 in get_dependencies_for_repository
> >  installed_rd, missing_rd =
> > get_installed_and_missing_repository_dependencies_for_new_install( trans, 
> > repo_info_tuple )
> > File
> > '/scratch/galaxy/home/oocyte/galaxy_oocyte/lib/tool_shed/util/common_install_util.py',
> >  line 214 in 
> > get_installed_and_missing_repository_dependencies_for_new_install
> >  tool_shed, name, owner, changeset_revision,
> > prior_installation_required =
> > suc.parse_repository_dependency_tuple( rd_tup )
> > File
> > '/scratch/galaxy/home/oocyte/galaxy_oocyte/lib/tool_shed/util/shed_util_common.py',
> >  line 1197 in parse_repository_dependency_tuple
> >  prior_installation_required = str( prior_installation_required )
> > UnboundLocalError: local variable 'prior_installation_required'
> > referenced before assignment
> > 
> > contains_error = False
> > repository_dependency_tuple =
> >  ['http://testtoolshed.g2.bx.psu.edu/', 'package_clapack_3_2_1',
> > 'rico', '56a949e5f998', 'True', 'False']
> > 
> > -rico
> > 
> > ___________________________________________________________
> > Please keep all replies on the list by using "reply all"
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> 
> 
> ___________________________________________________________
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