Hi Nathan
Do you have many tools working with those samples or just a few? If you
only have a limited, predefined set of tools you might wanna consider
adding the sample selection into the tool.
You can use the from_file, or from_data_table options to dynamically
create sample selection list. You can even drill down a hierarchical
list. Have a look at
~/tools/annotation_profiler/annotation_profiler.xml
which uses the file
~/tool-data/annotation_profiler_options.xml
All you need to do is keeping the file in sync with the directory
structure of your samples directory
Regards, Hans-Rudolf
On 09/30/2013 09:48 PM, Martin Čech wrote:
Hi Nathan,
Dannon answered similar question few days ago:
There's an import mechanism in libraries that'll allow you to simply
link to the file on disk without copy/upload. I believe the
"example_watch_folder.py" sample script (in the distribution) does
just this via the API, if you want an example.
This might be what you are looking for.
Martin
On Mon, Sep 30, 2013 at 2:43 PM, Cole, Nathan (NIH/NCI) [C]
<[email protected] <mailto:[email protected]>> wrote:
Hello, we’ve set up a local Galaxy instance in our genotyping and
next-gen sequencing lab with local Apache LDAP (AD) integration, NFS
mounts to a large NAS, and cluster integration coming. Do to the
high volume of samples and staff that will be using the system, I
want to set up data libraries (without copying to Galaxy). This is
obviously no problem the first time, however I was wondering if
there was a way to make a library, added from a system path, be
dynamic so that it would stay synchronized with the underlying file
structure?____
__ __
If a try dynamic library is not possible, is there a method for
adding files to an existing library via that same system path that
would not duplicate all of the original files in the data library?____
__ __
I did some scouring of the list and found some old unanswered
questions and some things tangentially related topics, but I was
unable to find a true answer or solution to my problem. Any
information on how to do the tasks above or other solutions to
provide the same functionality would be greatly appreciated.____
__ __
Thanks,____
Nathan____
__ __
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
