Hi Ross,
Thank you very much for guiding me to use sanitize tag. I searched the
forum and found this post extremely helpful
http://gmod.827538.n3.nabble.com/preserving-newlines-in-input-parameters-td4022647.html.
The problem got solved at least for now. One more question: is there anything
like predefined set for all special characters, something like string.letters,
string.digits ? Otherwise I have to define each of them in the add and remove
list.
Best regards!
Jun
From: Ross [mailto:ross.laza...@gmail.com]
Sent: 26 October 2013 03:07
To: Jun Fan
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] pass regular expression
Hi, Jun.
The inbuilt parameter sanitizer can be controlled - see
http://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax#A.3Csanitizer.3E_tag_set
The <valid> sub-tag allows precise control and you can specify eg
string.printable if you want ANY printable character in your parameter
Here's an example from the Tool Factory:
<param name="tool_name" type="text" value="My dynamic script" label="New
tool ID and title for outputs" size="60"
help="This will become the toolshed repository name so please choose
thoughtfully to avoid namespace clashes with$
<sanitizer invalid_char="">
<valid initial="string.letters,string.digits"/>
</sanitizer>
</param>
I hope this helps?
On Sat, Oct 26, 2013 at 11:43 AM, Jun Fan
<j....@qmul.ac.uk<mailto:j....@qmul.ac.uk>> wrote:
Hi all,
I am trying to develop a tool which allows the user to use regular
expression to only keep the lines matching the given pattern in the output.
There are many special characters, e.g. \ in \d. In the perl script the wrapper
invokes, the regular expression is printed as Xd+ for the regular expression
\d+. My question is how to pass these special characters including \, (, ), ^
etc. correctly into the perl script.
Best regards!
Jun
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