The good news is that it sounds like the build has been set up correctly; the
bad news is that a lack of console errors gives us nothing else to go on.
Would you be interested in sharing your datasets with me and I can take a look?
Also, our next release is coming next week, and there are some bug fixes for
Trackster that may solve your problems.
On Oct 28, 2013, at 4:46 AM, "Berner, Thomas" <thomas.ber...@jki.bund.de> wrote:
> Hi Jeremy,
> a) Yes, were are using a custom build and the build shows the correct
> number of contigs (28.592).
> b) There are no errors in the console.
> Thanks, Thomas
> Von: Jeremy Goecks [mailto:jeremy.goe...@emory.edu]
> Gesendet: Dienstag, 22. Oktober 2013 15:55
> An: Berner, Thomas
> Cc: firstname.lastname@example.org
> Betreff: Re: [galaxy-dev] trackster: missing graphs for large number of
> A couple questions:
> (a) are you using a custom build? If so, does the build show the correct
> number of chromosomes?
> BAM file?
> On Oct 21, 2013, at 11:05 AM, "Berner, Thomas" <thomas.ber...@jki.bund.de>
> Hey guys,
> we want to use trackster in our local galaxy instance (rev.
> 10392:1ae95b3aa98d release_2013.08.12) and followed the instructions at
> http://wiki.g2.bx.psu.edu/Learn/Visualization .
> We tested it with a custom Build of 96 sequences in a fasta file, where all
> bams were mapped against before, everything worked fine.
> But now we want to do the same for a much larger file (about 29.000 contigs)
> and no graph is displayed at all, no matter which contig is used.
> No error appears, only the graphs are missing.
> Any ideas what this could be? We would be grateful for any advice.
> Thomas Berner
> Julius Kühn-Institut (JKI)
> - Federal Research Centre for Cultivated Plants - Erwin Baur-Straße 27
> 06484 Quedlinburg
> - Germany -
> Phone: ++49 ( 0 ) 3946 47 562
> EMail: thomas.ber...@jki.bund.de
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