Hello,

I have also seen some of these errors while developing libraries. The
library code is not in central however it might be related to recent
changes to the history panel. Carl Eberhard might now more, adding him to
the conversation.

--Marten


On Mon, Nov 4, 2013 at 2:45 PM, Robert Baertsch <baert...@soe.ucsc.edu>wrote:

> It keeps doing posts, and I'm not seeing any new errors.
>
> POST http://su2c-dev.ucsc.edu:8383/library_common/library_item_updates
> 200 OK
> 121ms
> When I did a browser refresh, I got the following javascript error:     (I
> am logged in)
>
> Galaxy.currUser is undefined on Line 631 in history-panel.js
>
>
> When I opened the data library where the bam file was copying, everything
> is rendered ok.  It seems the browser refresh fixed things.
>
> -Robert
>
>
> On Nov 4, 2013, at 11:14 AM, James Taylor <ja...@jamestaylor.org> wrote:
>
> Robert, I'm not sure what is going on here, other than that the javascript
> that converts buttons into dropdown menus has not fired.
>
> Are there any javascript errors?
>
> Marten is working on rewriting libraries, and we will be eliminating the
> progressive loading popupmenus for something much more efficient, but this
> also might indicate a bug so let us know if there is anything odd in the
> console.
>
>
> --
> James Taylor, Associate Professor, Biology/CS, Emory University
>
>
> On Mon, Nov 4, 2013 at 1:58 PM, Robert Baertsch <baert...@soe.ucsc.edu>wrote:
>
>> HI James,
>> I just pulled in the latest code to see how you changed from iframe to
>> divs. Very exciting update.
>>
>>
>> I tried importing a bam file into the library using the admin tool that
>> reads the file directly from a path on the server.
>>
>> During the copy operation, the screen gets into a weird state.
>> ps -ef shows these two processes running:
>>  python /data/galaxy-central/tools/data_source/upload.py
>> /data/galaxy-central /data/galaxy-central/database/tmp/tmpywxnFE
>> /data/galaxy-central/database/tmp/tmpXkEvSY
>> 8876:/data/galaxy-central/database/job_working_directory/004/4547/dataset_8876_files:/data/galaxy-central/database/files/008/dataset_8876.dat
>>  samtools sort /data/galaxy-central/database/files/008/dataset_8876.dat
>> /tmp/tmpNbcggh/sorted
>>
>> Do you finish rendering the screen after the copy operation is complete?
>>
>> -Robert
>>
>> <Screen Shot 2013-11-04 at 10.53.02 AM.png>
>>
>
>
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   http://lists.bx.psu.edu/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
>
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

Reply via email to