On Mon, Nov 11, 2013 at 5:29 PM, Peter Cock <p.j.a.c...@googlemail.com> wrote:
> On Thu, Nov 7, 2013 at 4:51 PM, Peter Cock <p.j.a.c...@googlemail.com> wrote:
>> Hi Michiel,
>>
>> Did you finish wrapping samtools idxstats? I can't see it on the Tool Shed...
>>
>> If not, I may tackle this shortly.
>>
>> Peter
>
> I've implemented a 'samtools idxstats' wrapper, which seems to be
> working for me:
> https://github.com/peterjc/pico_galaxy/blob/master/tools/samtools_idxstats/samtools_idxstats.xml
>
> Test Tool Shed:
> http://testtoolshed.g2.bx.psu.edu/view/peterjc/samtools_idxstats
>
> Main Tool Shed (pending - I want to see the overnight test results
> on the Test Tool Shed first):
> http://toolshed.g2.bx.psu.edu/view/peterjc/samtools_idxstats

Having sorted out the dependency management, and seen the
test pass on the Test Tool Shed, this "samtools idxstats" wrapper
is now live on the main Tool Shed as well:
http://toolshed.g2.bx.psu.edu/view/peterjc/samtools_idxstats

Peter
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