Dear Galaxy community, I'm facing a problem in installing a tool from the tool-shed repository for a while now and I still don't know how to make it.
I'm trying to install deepTools (https://github.com/fidelram/deepTools) into our Galaxy instance but I never got the tools neither properly installed nor working. To make a long story short : I installed deepTools from the admin panel but got an error due to one of the dependencies (Scipy). I solved the dependency problem, uninstalled the tool and try to reinstall it. When I tried to reinstall the tool, nothing happened in the panel "monitor installing tool shed repositories". And when I look at what's is prompted from Galaxy logs. The same message is prompted again and again until I leave the "monitor installing tool shed repositories" page (see attached file). I also tried to reinstall the tool from the API but I've been told that I cannot since the tool has already been previously installed. Is there a way to completely remove a tool from Galaxy to restart the tool installation from the beginning? Thank you in advance for your help, Stephanie -- Stephanie Le Gras INSERM Computational scientist - Bioinformatician Microarray and high throughput sequencing platform IGBMC 1, rue Laurent Fries 67404 ILLKIRCH Cedex France Tel. : +33 (0)3 88 65 32 73
192.168.13.2 - - [29/Nov/2013:11:15:45 +0200] "POST /admin_toolshed/repository_installation_status_updates HTTP/1.0" 200 - 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