I was trying to install release ac935c35437a. This one didn't work.
Since the release version you told me about was not the same as the one I
was trying to install, I've tried one more time to install deepTools and
finally installation has worked.
Stephanie Le Gras
Computational scientist - Bioinformatician
Microarray and high throughput sequencing platform
1, rue Laurent Fries
67404 ILLKIRCH Cedex
Tel. : +33 (0)3 88 65 32 73
Le 29/11/13 15:08, « Bjoern Gruening » <bjoern.gruen...@gmail.com> a écrit
>> I'm facing a problem in installing a tool from the tool-shed
>> repository for a while now and I still don't know how to make it.
>> I'm trying to install deepTools
>> (https://github.com/fidelram/deepTools) into our Galaxy instance but I
>> never got the tools neither properly installed nor working.
>> To make a long story short :
>> I installed deepTools from the admin panel but got an error due to one
>> of the dependencies (Scipy).
>Can you provide me with the exact error, please?
>> I solved the dependency problem, uninstalled the tool and try to
>> reinstall it.
>> When I tried to reinstall the tool, nothing happened in the panel
>> "monitor installing tool shed repositories".
>What means reinstall? You can repair a repository. You have this "repair
>repository" action under "Repository Actions".
>You can also remove a repository from your installation with "Deactivate
>or uninstall repository" under the same menue.
>> And when I look at what's is prompted from Galaxy logs. The same
>> message is prompted again and again until I leave the "monitor
>> installing tool shed repositories" page (see attached file).
>That is just a webserver message, nothing from the toolshed.
>> I also tried to reinstall the tool from the API but I've been told
>> that I cannot since the tool has already been previously installed.
>> Is there a way to completely remove a tool from Galaxy to restart the
>> tool installation from the beginning?
>Yes, see above. Can you tell me which exact version you have installed
>from deeptools (latest version is c54d31467be4) and which version of
>Galaxy you are running?
>Also I released yesterday a version with pysam 0.7.7 dependency that
>should fix a few pysam bugs.
>Thanks for using deepTools and Galaxy,
>> Thank you in advance for your help,
>> Stephanie Le Gras
>> Computational scientist - Bioinformatician
>> Microarray and high throughput sequencing platform
>> 1, rue Laurent Fries
>> 67404 ILLKIRCH Cedex
>> Tel. : +33 (0)3 88 65 32 73
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