lib/galaxy/webapps/galaxy/api/provenance.py
throws an exception when an optional dataset parameter is None
Traceback (most recent call last):
File "/Users/jj/gxt/gxt/lib/galaxy/web/framework/__init__.py", line 199, in
decorator
rval = func( self, trans, *args, **kwargs)
File "/Users/jj/gxt/gxt/lib/galaxy/webapps/galaxy/api/provenance.py", line
18, in index
value = self._get_provenance( trans, self.provenance_item_class,
kwd[self.provenance_item_id], follow )
File "/Users/jj/gxt/gxt/lib/galaxy/webapps/galaxy/api/provenance.py", line
38, in _get_provenance
out = self._get_record(trans, provenance_item, follow)
File "/Users/jj/gxt/gxt/lib/galaxy/webapps/galaxy/api/provenance.py", line
50, in _get_record
"parameters": self._get_job_record(trans, job, follow),
File "/Users/jj/gxt/gxt/lib/galaxy/webapps/galaxy/api/provenance.py", line
65, in _get_job_record
"id": trans.security.encode_id(in_d.dataset.id),
AttributeError: 'NoneType' object has no attribute 'id'
$ hg diff lib/galaxy/webapps/galaxy/api/provenance.py
diff -r 228156daa575 lib/galaxy/webapps/galaxy/api/provenance.py
--- a/lib/galaxy/webapps/galaxy/api/provenance.py Fri Nov 29 17:06:02
2013 -0500
+++ b/lib/galaxy/webapps/galaxy/api/provenance.py Sat Nov 30 08:08:56
2013 -0600
@@ -58,6 +58,8 @@
for p in job.parameters:
out[p.name] = p.value
for in_d in job.input_datasets:
+ if not in_d.dataset:
+ continue
if follow:
out[in_d.name] = self._get_record(trans, in_d.dataset, follow)
else:
--
James E. Johnson, Minnesota Supercomputing Institute, University of Minnesota
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