-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 I'm at a bit of a loss here, I've found that when I have a GFF file, it offers to be visualized, but I cannot figure out how to visualize on a Fasta file in my history.
I've done the following 1. GFF3 output file -> trackster 2. New viz 3. Build not listed -> click to add build from a fasta file (my genome) 4. Back to new viz, reference genome selected as the one I created. Now I'm faced with this error: Error: The requested genome file (/home/galaxy/galaxy/tool-data/shared/ucsc/chrom/?.len) could not be opened. Exiting! sort: write failed: standard output: Broken pipe sort: write error Couldn't open /home/galaxy/galaxy/tool-data/shared/ucsc/chrom/?.len , No such file or directory Am I *only* able to viz. gff files on UCSC chromosomes? It seems a bit obtuse when I have GFF data sets related to fasta phage genomes that I'm working with, all of which were uploaded/generated in galaxy. Is there any (preferrably easy) way to accomplish this? Cheers, Eric - -- Eric Rasche Programmer II Center for Phage Technology Texas A&M University College Station, TX 77843 404-692-2048 e...@tamu.edu rasche.e...@yandex.ru -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.11 (GNU/Linux) Comment: Using GnuPG with Thunderbird - http://www.enigmail.net/ iQIcBAEBAgAGBQJSnmjSAAoJEMqDXdrsMcpV2B4QALzzEkR1TgoqjFExTFQQkJZg /K06M5C5Kc4E2jFlfkIcRYpXIDv6KYxahTPCSD5w7FzoTI6cfVe9erhjv2VbLJP0 gwRmM+LW4g+oeO5/zpxgu3z4bWEN9Th19/WXMeD1KOvDkhA+Yrd6ExLqT+NOvn5a MJjSLzrKCh4PMbSP4YAhCmweBAFTCA/Xix+E8E5dPNHJt4xM3NICILFafmK/HYuj vqMV7yDJq0AJhAM6eNzv/b/uJRirNXXeAEqQSfihNPTANeKvKDHr4UAI5vMPPfIB 7PTzdB0Qqlr/6qqfy8vtm4kTzYZHyoT6QtQ7WkytKlWWY9qTNu30eeR1r8uxn6R3 XNJ9SNfOCmOVv9S87phHG5RkJoj217JpnhiH6Kyn9aFhuQEyp/URaJhxn/gJFAuk rYLUvz2F6gwOZNVz6X2l6t2w7jMLDG41wdflBrcDHnvLWcjBZRU/8TRyoqQB8Oop uLkweGF2RdDCGSvZXV8ubCRs7dEl2t6N+iNLS1+5TJmFk9KKg3LNiRR/I2YK73IE cZ1Yzpfb5FpQ72a6B2Mb74rso9b/9zQNNODJejQ4Zbd8mhOZgWnrraTd+dmhlLG/ e190CzpFiag1b3oNRvMy/rcUNnCIbHR44SZiW+KfeEreRNBk3H0iPJT+PynDQ5oz om/wT9z9PhhcaMmBPwoy =0VEm -----END PGP SIGNATURE----- ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
